Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0833 ATGAGAATGAGGGTGCTCCTTCTTATAGCATTTACAATTTTTTCTGTGATTATCAATGGTAGATCTGAGTATGAGCTTTTCTACCAAAACGACACCGGATCAATGGCTGCGAAGCCTCTCATGGTCCCTCTCACTCTTATTCCGGGAGCTGCTTCCAAAGGAGCTGTTTGTTTAGATGGAACGTTGCCTGGTTATCACTTTCATCCTGGATTTGGATCTGGGGCAAATAGTTGGCTCATTCAATTGGAGGGTGGAGGATGGTGTAATACCATCAGAAGTTGTGTCTTCAGAAAAACCACTCGTCGTGGTTCCTCAAAATTCATGGAAAAGCAACTAGCATTCACAGGGATATTAAGCAACAAAGCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGGGCATCTTTCAGTGGAGATAGTCAAGACGAGGCTGCACAGCTTCAATTCCGAGGACAAAAAATCTGGCAAGCTGCAATGGAGGAATTATTGTCAAAAGGGATGAAGAAGGCCAACCAGGCTCTTTTGTCTGGATGCTCTGCTGGTGGTCTAGCGTCTATAATACATTGTGATGAGTTCCGAACCTTATTTCCTACATCTACCAAAGTGAAATGTTTGAGTGATGCAGGGTTTTTCCTAGATGCGGTTGATGTTGCTGGGGTTCGCACAATGAGGAATCTGTTTGGAGGTGTAGTTAAGTTACAGGAAGTGCAAAAAAATCTTCCAGAAAGTTGTCTCAACCAGTTGGACCCAACTTCGTGCTTTTTTCCTCAAAATTTGATCAACCATGTTCAGACTCCATTGTTTCTACTCAATGCAGCTTATGATTCATGGCAGGTCCAAGAAAGTTTGGTCTCTGGTTCAGCAGATCCCCATGGCTCTTGGAATGATTGTAAACGTAATCGTGCACTCTGTAACTCATCTCAAATTCAATTCTTCCAAGATTTCAGAAATCAAATGCTAAACTACATCAAAGGCTTCTCAGGGGAATCTCGTACTGGGTTATTCATCAATTCTTGTTTTGCTCATTGCCACTCCGAATTACAAGATACTTGGTTTGCTGATGACTCTCCAGTTATTGGCAATACGCCAGTTGCAACTGCTGTTGGACAATGGTATTTTGATCGGAAAACTGTCAAAGCTATAGATTGTCCTTATCCCTGTGACAAAACTTGCCATAATTCGGTCTTCAATGGTGATAACACATCTACCATGACCATGACATATTCTCGTTCCACGAGGCTGACTCGTAGTGCTGGCCTATATATTCTGAGCAGTTTATTGTTAATTACTTACTCCTAG 1323 0.421 MRMRVLLLIAFTIFSVIINGRSEYELFYQNDTGSMAAKPLMVPLTLIPGAASKGAVCLDGTLPGYHFHPGFGSGANSWLIQLEGGGWCNTIRSCVFRKTTRRGSSKFMEKQLAFTGILSNKAEENPDFFNWNRVKVRYCDGASFSGDSQDEAAQLQFRGQKIWQAAMEELLSKGMKKANQALLSGCSAGGLASIIHCDEFRTLFPTSTKVKCLSDAGFFLDAVDVAGVRTMRNLFGGVVKLQEVQKNLPESCLNQLDPTSCFFPQNLINHVQTPLFLLNAAYDSWQVQESLVSGSADPHGSWNDCKRNRALCNSSQIQFFQDFRNQMLNYIKGFSGESRTGLFINSCFAHCHSELQDTWFADDSPVIGNTPVATAVGQWYFDRKTVKAIDCPYPCDKTCHNSVFNGDNTSTMTMTYSRSTRLTRSAGLYILSSLLLITYS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0833 440 PANTHER NOTUM-RELATED 3 417 IPR004963 GO:0016787
Vra3g0833 440 PANTHER PECTIN ACETYLESTERASE 3 417 - -
Vra3g0833 440 Pfam Pectinacetylesterase 36 385 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0833 Vra-Chr3 8469337 8474875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0833 35 439 Carbohydrate Esterase AT3G62060 68.473 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0833 K19882 - gmx:100785270 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0852 3 8652311 8656791 Vra3g0833 3 8469337 8474875 ECH
Vra7g2686 7 47111162 47116176 Vra3g0833 3 8469337 8474875 ECH
Vra3g0833 3 8469337 8474875 Vra3g0833 3 8469337 8474875 ECH