Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0831 ATGGGAAGGCATTCCTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTGTGGTCACCAGAGGAGGATGAAAAACTTCTGAGGCATATCACTAAGCATGGTCATGGTTGTTGGAGCTCCGTTCCTAAGCAAGCAGGTTTGCATAGGTGCGGCAAGAGCTGCAGGCTTCGCTGGATCAATTATCTTAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAGGAGGAAAATCTTATCATTGAACTTCATGCAGTGTTAGGGAACAGATGGTCTCAAATAGCAGCACAATTGCCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTTAAGAAGAAACTGAGGCAAAGAGGTATAAACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGTGAGGAGGAGAAAACAAGGAGCCAAGAATTATCCAATGAATTGAACCTCTTGAATTCTGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCTTCGATTGCCCCCAAAGCCTATGAGATGGAAGGTTCCTGCAGCTCCAAGATTAACAACAAAAATGACACCAACTTGATAGCCAATTGTTCCAACAAAGACTTGTTCCTAGACAGCTACACCACTAGTTGTCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATGACTGACACTCTCCCAACCAATTCAGACTCCAGCCATTGGTTCAGTCCAACTGCAAGACCCATTGATATAAACTCTGAGTTTACTTCCAATGTTATGTCCATTCTTCCACCTACAACAACCTCATTTCTCCCTAGCACTTCTTTTTGCTACAAGCCATCACTTGCCGTCCCTCCAGAAGATATTTCAGCACCTTCTTTTGCTTTGAATGGACCCAATTACTGGGAACCCAGTGCCTCCAACAACAGCAATGGCAGCAACACAAGTGATGGCAGCAGAGAGTTCACAAGTAGCAAGAACAGTGTTCTTTCTTCGTGGGGACTGACAGAAGAAGCCAAGTGGTCTGAGTACCTCCACAACCCAATGCTGATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGGTACCTGATAACACTTTAGGGTCCATAATTTCTGGTTCCAAGGAGCAACACCAGTCACAAACTTCTGCCATCTTTTCCAAGGACATCCAAAAGCTAACAGCAGCGTTTGGACATATATAA 1215 0.4477 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKHGHGCWSSVPKQAGLHRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGINPVTHKPLSEVENGEEEKTRSQELSNELNLLNSESFKSDEGSYEQRASSIAPKAYEMEGSCSSKINNKNDTNLIANCSNKDLFLDSYTTSCQPSDLMGNYPLQMTDTLPTNSDSSHWFSPTARPIDINSEFTSNVMSILPPTTTSFLPSTSFCYKPSLAVPPEDISAPSFALNGPNYWEPSASNNSNGSNTSDGSREFTSSKNSVLSSWGLTEEAKWSEYLHNPMLMLAAPESLCNQIRPATHLVPDNTLGSIISGSKEQHQSQTSAIFSKDIQKLTAAFGHI* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0831 404 MobiDBLite consensus disorder prediction 122 149 - -
Vra3g0831 404 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra3g0831 404 PANTHER MYB DOMAIN PROTEIN 55 1 398 - -
Vra3g0831 404 CDD SANT 17 61 IPR001005 -
Vra3g0831 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vra3g0831 404 PANTHER HOMEODOMAIN-RELATED 1 398 - -
Vra3g0831 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vra3g0831 404 Coils Coil 135 155 - -
Vra3g0831 404 MobiDBLite consensus disorder prediction 302 322 - -
Vra3g0831 404 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra3g0831 404 Gene3D - 11 67 - -
Vra3g0831 404 MobiDBLite consensus disorder prediction 130 144 - -
Vra3g0831 404 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra3g0831 404 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra3g0831 404 Gene3D - 69 145 - -
Vra3g0831 404 SMART sant 66 114 IPR001005 -
Vra3g0831 404 SMART sant 13 63 IPR001005 -
Vra3g0831 404 CDD SANT 69 109 IPR001005 -
Vra3g0831 404 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0831 Vra-Chr3 8445906 8447890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0831 1 156 MYB Transcription Factor Family AT4G01680 82.692 6.83e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g0831 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0831 K09422 - gmx:100819449 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0853 3 8663124 8665482 Vra3g0831 3 8445906 8447890 ECH
Vra3g0831 3 8445906 8447890 Vra3g0831 3 8445906 8447890 ECH