Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0829 ATGATTCATGATATGCCTGACTCCACTCGCTCGGCTATGACAAGAACCTCCGACTCCATTTACGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGCACGAGGAGGTTCATCAAATAAATCACCCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTTCCCCTCTAAAGGAATCTGACATGAGCTCTTCGTATCAAAGCAATGCCCAAGATTCCTGTCATTCCAGCCAAAACAAGAATTCCTGCAAGCTTAACGAGGAACTTGAAAACTTATTAAGACCAGCAAAGGACTCCAAGCCCGTTACCCCAGGACATGCTCTCTTACAGCAGTGCTCATCTTCATCTCCTCTCAAGAAACAAAGAACTCATTCAACTCAGACACCACCAACACCGCCAAACACACGGAACATGGGGTTTCATCAAACAACAGCTAAAGTGAACTTCTCCAATTTTTCGATACCTGCAGTCTTTCTCAAATCCAGTACTTGTCATGGAAGCAGTACAACTCAGCAGACAAAAAATTATTCATATCCAGCGAGAGTGGAGGAGATTGAAAGAAGTGAAAAACCACCCCCACCCCTTGATGAGCACTCTGAAGCTATTGGTCTTGGAATCCACAGACACCAAGCTCAACAAGCACTTAGAGCCAAGGAAAAAGCTTATAATATTAATAACACTATCTGTAAAGAACCGTTCCTAGCTTCTTCTGTGTGCTCTCTTGGAGCTTCAAACGACCCAAATGTTGGTATCAGGAAAGATGAGGACACCGACGACTCAAATTATTTAAGTGATAATGACGAAGAGCCTGAAAATATGGTAAAGCAAGATAGGGAGGGAAACAGACTCAAGAGAACCAGAAACGCTGAGGTTCATAACTTATCTGAAAAGAAGCGCAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCAAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGAGTATCTGAAAACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCGGCAGCGCCTCACATGAATGGACCGCATTTATCGCAGTTGGTGGGAGCTGGAATGGGATTCAGGCCACCAGAGCTTCCTCTTCCACCACTATCTGCTATCACAGACACCAGACTTCATCAGATGTTTGGTTTCCCCAACCAAATACCAACTATGCCAATGCCTCACGCACCTTTCTTCCCCGTCACCGGAAATTCTCCCACACAACCACACTTGGCCGCCACCACCGCACCTACACAACATCTTGCTAAATCTGCTGCATCTCTTCAGGTCTCACTCCCCACCAACTTGGACCCTCTGGAAAATGCAACAAATCAACTGCAGAATCCAGTGTCCTTTCATCCCCACGGCATCAGTACTCCTTTCATTTTTCCACAAAAGTAG 1482 0.4453 MIHDMPDSTRSAMTRTSDSIYDNDFLELVWENGEVVARGGSSNKSPSIKRTRLNPLYSLEDHLSPLKESDMSSSYQSNAQDSCHSSQNKNSCKLNEELENLLRPAKDSKPVTPGHALLQQCSSSSPLKKQRTHSTQTPPTPPNTRNMGFHQTTAKVNFSNFSIPAVFLKSSTCHGSSTTQQTKNYSYPARVEEIERSEKPPPPLDEHSEAIGLGIHRHQAQQALRAKEKAYNINNTICKEPFLASSVCSLGASNDPNVGIRKDEDTDDSNYLSDNDEEPENMVKQDREGNRLKRTRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIEYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLSQLVGAGMGFRPPELPLPPLSAITDTRLHQMFGFPNQIPTMPMPHAPFFPVTGNSPTQPHLAATTAPTQHLAKSAASLQVSLPTNLDPLENATNQLQNPVSFHPHGISTPFIFPQK* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0829 493 MobiDBLite consensus disorder prediction 68 89 - -
Vra3g0829 493 Pfam Helix-loop-helix DNA-binding domain 300 345 IPR011598 GO:0046983
Vra3g0829 493 MobiDBLite consensus disorder prediction 105 146 - -
Vra3g0829 493 MobiDBLite consensus disorder prediction 254 290 - -
Vra3g0829 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 360 IPR036638 GO:0046983
Vra3g0829 493 SMART finulus 302 351 IPR011598 GO:0046983
Vra3g0829 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Vra3g0829 493 MobiDBLite consensus disorder prediction 115 146 - -
Vra3g0829 493 PANTHER TRANSCRIPTION FACTOR PIF3 198 471 IPR044273 GO:0003700|GO:0006355
Vra3g0829 493 PANTHER TRANSCRIPTION FACTOR PIF3 1 197 IPR044273 GO:0003700|GO:0006355
Vra3g0829 493 CDD bHLH_AtPIF_like 296 358 - -
Vra3g0829 493 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 198 471 - -
Vra3g0829 493 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 197 - -
Vra3g0829 493 Gene3D - 292 353 IPR036638 GO:0046983
Vra3g0829 493 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0829 Vra-Chr3 8423717 8427121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0829 242 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 45.890 2.39e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra3g0829 HLH 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0829 K12126 - gmx:100784724 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0829 3 8423717 8427121 Vra3g0829 3 8423717 8427121 ECH