Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0827 ATGGGAAAACACTCTAATTCTTCTTCCTCTTCCATCAGCAGTAGCAGCAACCACCACCACCTTCTCATTTCCACTGCATCCTCTTTCACACAAGAGCTTCCCACTGATCTTAGCCTTGGACTCAGCATTTCCGCCGCTCACCATGGTGGTTCTTCTATTTCAAGGGGGCATTGGCAACAACCACAGCACCCTCTTGTGAACATTTCGCAAGCGGCTGAAGCAAATGATTGCAACGACCATAGCAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATAGGAAGGAAACTCAATATTCTTGCTCATGGAAGTTATTATGAGTTAGTGAAGAGTCTTGAACACATGTTCGACACTACCATTCTTTGGGGGACAGAGATGAATGGAGTGCAACCCGAGAGATGCCATGTACTAACATACGAAGATGAAGAAGGAGATTTGGTCATGGTTGGAGATGTTCCTTGGGAGATGTTCTTATCCACAGTAAAGAGATTGAAGATCACAAGGGTAGACACATTCGGGTGTTAA 528 0.4508 MGKHSNSSSSSISSSSNHHHLLISTASSFTQELPTDLSLGLSISAAHHGGSSISRGHWQQPQHPLVNISQAAEANDCNDHSSFFVKVYMEGIPIGRKLNILAHGSYYELVKSLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0827 175 Gene3D - 76 174 - -
Vra3g0827 175 Pfam AUX/IAA family 70 169 IPR033389 -
Vra3g0827 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 174 IPR003311 GO:0005634|GO:0006355
Vra3g0827 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Vra3g0827 175 PANTHER AUXIN-INDUCED PROTEIN 2 174 - -
Vra3g0827 175 SUPERFAMILY CAD & PB1 domains 77 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0827 Vra-Chr3 8405550 8407084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0827 50 167 B3 DNA Binding Superfamily AT5G62000 30.000 2.93e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra3g0827 AUX_IAA 7.6e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0827 K14484 - gmx:100783140 280.411