Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0825 ATGGAGAACCGACACCACCGTGAATTGACCTTCTTAAGCTCCGCCGGCGACTTCCTCAATCCCCCTTCCGATCACACAACCCGCAACACCGATCCTCCCATCAAAGAAATGGACTTCTTCTCATCATCACCTTCATCTCCGGCTACTCATCATCATCACAACCATGTTGGACTTCAAGATCACACTCATCGACAAGGATCACCACCACACGTCTCTCATCACCCTGTAAACACCGGACTGAATTTAACTTGTGCAAGTACTGGATTCACAAAAGAAGAAAATGATGAAAATCATGAAGCTGAGCTGAGTTCCATTGAAAGTCAATTGCGGAGACTACAGGAAGAGAATCGTAAGTTGAGAACTGTGCTGGACCAGATTACCAGAAGCTATACCCAGCTACAAGCTCAGTTATTCATCACTCTGCAGAAACAAAAGCTTCCTCAGAATACGGAGGCAAATGGGACGGTGTCGGAACAAAAAAATGTGGACCCAGCTGGAGTATGCAGAAAGTTAGAGGTGGTAAATGAAGCATCAGTTTGTGATGAAAAGACTGATGGTGAGGTATCGGTTTGTCGCTCAAACAACGTTGAGGTATTGTCAAAGACAGATGATGATGAGGCTCCTCAATTGATAAAACTGAACCTTGGAAAACAGGCTTGTCCCGATGCTGCAGACGATGTTCTTGACCGGTCCTCCTCACAGAGCTGGGGCTCATCCAAGTTAGAAGAACAACCCAAAACTGCAGAACAAGTTTCTGCAGATCAGATTCCTCTCAGGAAAGCCAGGGTTTCCGTACGAGCAAGATCAGAAGCTCCACTGATCAGCGATGGTTGTCAGTGGAGGAAATATGGACAGAAAATGGCAAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGTACTATGGCTGTAGGATGCCCAGTGCGCAAACAGAGATGCGTAGAAGACAAGACGGTGTTGATAACAACCTACGAAGGCAATCACAATCACCCTCTGCCACCAACTGCCACTGCCATGGCAAGTACCACGTCAGCCGCCGCCGCCATGCTCTTGTCAGGTTCAACAGCCAGCAAGGAAGCACTCACAAACTCTGCAGGATATTACTCTTCACTTCCCTACGCTTCAATGGCAACCCTATCAGCTTCAGCACCATTCCCGACCATTACTCTCGACTTGACCCAAAACCCCAACGCCATACACCTCCACCGCGTTCCACCCCATGCTACTACGTTCCCTCTCCCACTGCATGCTTCCGGTGGTCACCAATTTCTAGGCCACCCCTTGTTCTTCTCACAGAAGCTTCCACCTGCAGCATCGTCCCTACTTCATGCTCGACAAACTTCATCCATGGTCGAAACGGTTAGTGCAGCCATTGCTTCGGATCCAAACTTCACTTCAGCTTTGGCAGCAGCAATCTCCTCAATCATTGGAATACCTAGTAACAACAACGGAACTAGTGGTGCCATTGGATCGCCGCAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG 1515 0.4865 MENRHHRELTFLSSAGDFLNPPSDHTTRNTDPPIKEMDFFSSSPSSPATHHHHNHVGLQDHTHRQGSPPHVSHHPVNTGLNLTCASTGFTKEENDENHEAELSSIESQLRRLQEENRKLRTVLDQITRSYTQLQAQLFITLQKQKLPQNTEANGTVSEQKNVDPAGVCRKLEVVNEASVCDEKTDGEVSVCRSNNVEVLSKTDDDEAPQLIKLNLGKQACPDAADDVLDRSSSQSWGSSKLEEQPKTAEQVSADQIPLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQRCVEDKTVLITTYEGNHNHPLPPTATAMASTTSAAAAMLLSGSTASKEALTNSAGYYSSLPYASMATLSASAPFPTITLDLTQNPNAIHLHRVPPHATTFPLPLHASGGHQFLGHPLFFSQKLPPAASSLLHARQTSSMVETVSAAIASDPNFTSALAAAISSIIGIPSNNNGTSGAIGSPQLPQSCTTFSTN* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0825 504 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 29 503 IPR044810 GO:0003700
Vra3g0825 504 Coils Coil 95 136 - -
Vra3g0825 504 MobiDBLite consensus disorder prediction 228 251 - -
Vra3g0825 504 Pfam WRKY DNA -binding domain 276 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0825 504 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 29 503 - -
Vra3g0825 504 Gene3D WRKY domain 259 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0825 504 ProSiteProfiles WRKY domain profile. 269 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0825 504 MobiDBLite consensus disorder prediction 1 81 - -
Vra3g0825 504 SUPERFAMILY WRKY DNA-binding domain 267 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0825 504 SMART WRKY_cls 274 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0825 504 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0825 Vra-Chr3 8386601 8391577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0825 7 504 WRKY Transcription Factor Family AT4G01720 40.625 7.53e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra3g0825 WRKY 5.9e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0825 - - gmx:100817839 631.328