Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0823 ATGGTTTTGTTCGTTATGTTCTGCGGTTATGGTTTGTCTGTATGGTTTGGCGCAAAGATGATAATGGAAAGAGGATATGGTGCTGGTGCGGTGGTCAATGTGTTTGTTGCTGTGTTAAATGCTTCCNTGTCTCTGGGTCAGGCATCTCCTTCTATGAACGCTTTTGCTGAAGGTCAAGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAATGATAGATGCTTATGACCCAAATGGAAAAAACCTAGAGGATATTCATGGTGAAATCCATTTGAGGAATGTTTATTTCAGCTATCCAGCCAGACCTGAGGAGTTGATATTCAATGGATTCTCTCTTCATATAGCTAGTGGCACTACGGCAGCTTTAGTAGGACAAAGTGGAAGTGGGAAATCTGCAGTTATCAGTTTAATTGAAAGATTCTACGATCCACAGGCTGGTGAAGTTCTTATTGATGGCACTAATGTGAAAGAATTAGAGCTCAGGTGGATCAGAGGAAAAATTGGCCTTGTCAGTCAGGAGCCAGTGTTATTTGCATCTAGCATTAAGGATAATATTGCGTATGGAAAAGATGGANCAACACTTGAAGAGATAAGANGTGCAGCTGAACTTGCAAATGCTGCTAAATTCATTGACAAACTGCCACAGGGATTGGACACAATGGTTGGTGAGAATGGAACTCAATTATCCGGTGGACAGAAGCAGCGCATTGCCATTGCCAGAGCAATCCTAAAAGATCCAAGAATTTTACTTTTAGATGAAGCAACAAGTGCACTTGACGCAGAGTCAGAAAGAATAGTGCAAGAAGCTCTAGACAGGATCATGGTCAACANAACTACTGTCATTGTCGCACATCNCCTGAGCACGGTGAGAAAGGCTGATATGATTGCAGTAATTCATAGAGGGAAAATGGTTGAAAAAGGAAGNCACGAAGAATTAACCAAAGATCCTGAGGGAGCATACTCTCAACTGATACGTTTACAAGAAGGAAACCAGGCATCAGAAGAAACAAGAGACAGCCAAAACAAGAGGGAAATTTCCTCAGAATCCTTTAAAAAGTTGAGTCAAAGGCTGTCATTTCGAAGATCAGGGTCATCTCTGGGTAACAGAAGCCGCCACTCTTTTTCTGTTTCATTTGGTTTGCCTACAGCAATTAGCATCCCTGATCCTGACCTTGAAAACTCACAGCCTCGAGAAAAATCGCCAGAAATTTCACTCTGGCGCCTTGTGTCCCTCGATAAGTCAGAGATCCCAGTGCTTCTGATTGGATGTGTAGCTGCAATAGCAAATTGTGTTATATATCCAATATTTGGCGTATTGCTCTCCAGAATTATCAAAACATTTTTTAAACCTTTTCCAGAGATGAAAAGTGATTCCAAGTTTTGGGCACTCATGTTTGTGATCCTTGGAATTGCATCTTTAATAGCAATTCCAGCCAGAAGTTACTTTTTCTCTGTGGCGGGCAGTAAGTTAATCCGACGAATCAGGCTCATTTGTTTTGAGAAGGTGATAAACATGGAAGTTGGGTGGTTTGATGAGCCTGAGAACTCGAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCGGTGCGAGCCCTTGTTGGTGATGCTCTAGAACTATTGGTTCAAAATATAGCGACAGCATTGACAGGTTTGATTATTGCTTTCGTTGCGAGCTGGCAATTGGCGTTTATTGTTCTTGTTTNGGTTCCCCTTGTTGGAATGAATGGCTATATCCAAATGAAATTCATGAAGGGATCCAGCACAGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATACGAACAGTAGCTTCTTTCTGTGCAGAGGAGAAAGTTATGGAACTATACAGGAAAAAATGTGAAGGTCCCATGAAAGCAGGGATTCGACAAGGTTTGATAAGTGGAACAAGTTATGGTCTTTCATTTTTCTTGTTCTTCAGTGTCTATGCAACCAATTTCTATGCCGGAGCCAGACTTGTGGAAGCTGGCAAGGCATCATGGTTTTCTTTGCTTTAA 2055 0.418 MVLFVMFCGYGLSVWFGAKMIMERGYGAGAVVNVFVAVLNASXSLGQASPSMNAFAEGQAAAYKMFQTIERKPMIDAYDPNGKNLEDIHGEIHLRNVYFSYPARPEELIFNGFSLHIASGTTAALVGQSGSGKSAVISLIERFYDPQAGEVLIDGTNVKELELRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGXTLEEIRXAAELANAAKFIDKLPQGLDTMVGENGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNXTTVIVAHXLSTVRKADMIAVIHRGKMVEKGXHEELTKDPEGAYSQLIRLQEGNQASEETRDSQNKREISSESFKKLSQRLSFRRSGSSLGNRSRHSFSVSFGLPTAISIPDPDLENSQPREKSPEISLWRLVSLDKSEIPVLLIGCVAAIANCVIYPIFGVLLSRIIKTFFKPFPEMKSDSKFWALMFVILGIASLIAIPARSYFFSVAGSKLIRRIRLICFEKVINMEVGWFDEPENSSGAIGARLSADAASVRALVGDALELLVQNIATALTGLIIAFVASWQLAFIVLVXVPLVGMNGYIQMKFMKGSSTDAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKAGIRQGLISGTSYGLSFFLFFSVYATNFYAGARLVEAGKASWFSLL* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0823 684 Pfam ABC transporter 111 259 IPR003439 GO:0005524
Vra3g0823 684 Gene3D ABC transporter type 1, transmembrane domain 390 684 IPR036640 GO:0005524|GO:0016021
Vra3g0823 684 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 423 679 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0823 684 SMART AAA_5 119 311 IPR003593 -
Vra3g0823 684 SUPERFAMILY ABC transporter transmembrane region 3 76 IPR036640 GO:0005524|GO:0016021
Vra3g0823 684 Gene3D - 83 351 IPR027417 -
Vra3g0823 684 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 92 328 IPR003439 GO:0005524
Vra3g0823 684 CDD ABC_MTABC3_MDL1_MDL2 92 330 - -
Vra3g0823 684 SUPERFAMILY ABC transporter transmembrane region 409 681 IPR036640 GO:0005524|GO:0016021
Vra3g0823 684 Gene3D ABC transporter type 1, transmembrane domain 1 71 IPR036640 GO:0005524|GO:0016021
Vra3g0823 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 330 IPR027417 -
Vra3g0823 684 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 2 679 - -
Vra3g0823 684 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 57 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0823 684 Pfam ABC transporter transmembrane region 422 678 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0823 684 CDD ABC_6TM_Pgp_ABCB1_D2_like 413 684 - -
Vra3g0823 684 ProSitePatterns ABC transporters family signature. 231 245 IPR017871 GO:0005524
Vra3g0823 684 PANTHER - 2 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0823 Vra-Chr3 8362199 8365411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0823 4 676 Calmodulin-binding Proteins AT2G36910 41.606 1.66e-163 502