Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0817 ATGTTCTCTTTTCTTCTTTTGCTTTCTGCAATGGAAGACGAGCCTTTTCTCACAACAACAACGACAACAACACTCACTTCCCAACGGGCGGATTTCCACTTGCAATCTTCCAAGTCCTTCGACGACGTCACAGCGCCACGCGCCGCCCGTAACGCCGAGATTCAAGAGCACCTCTCCCGTCCCTCTCCCTTTCACTCCAAGAAGAAAAAGCTCAGTCGTTGCAAGACAGCACCCGCCCTGGTTAGCATGCGAGACCTCAAACCTAAGACGCCCGAAGTCCCCAAGCCTCAGTCCAGTTCCATAATCCGCCAAGGCATGTGCTTACTCGCCATGTACCTCTGTGTGGGAGTCGCCATTTACTCTTTCAACAGGGACAATTTCTCCGGCATCGAGACCCACCCCTTGGTCGATGCCCTTTACTTTTGTATAGTTACCATGTGTACCATAGGATACGGAGACATCGCTCCCTTGACCCCGCTTACAAAGGTTTTCGCTTGTGTCTTTGTGCTGGTGGGGTTCGGCTTTATAGATATACTCCTCAGTGGCCTTGTCAACTTTGTTTTGGATGTGCAAGAGAACATGATCCTCACGGGGCTCCAAATGGGTGCAACTGGGAGGGAGGGCTTTTCTGCCCGGAACTACATCGTTGATGTGGTGAAGGGGAGGATGAGGATCAGGTTGAAGGTTGGTTTGGCGCTTGGGGTTGTTGTGCTTTGTATTGGGATTGGGTGTTTGGTGTTGTACTTTGTGGAGGGCTTGGATTTGGTTGATTCTATTTACTTGTCAGTTATGTCTGTCACAACGGTTGGGTATGGTGACAGGGCGTTTAAGACACTTCCCGGTCGGTTATTTGCTGCTATTTGGTTGCTCTTTTCAACTTTGATGGTGGCACGGGCTTTCCTCTATTTGGCAGAGGCCAGAATTAATAGAAGGCATCGCAGAATGGCCAACAAGGTGTTGCAGAGAGAAATTACTGTTGAGGATTTGCTTGCTGCCGATATCAACCACACCGGTTTCATCAGCAAGTCTGAGTATGTAATCTTCAAGCTGAAAGAGATGGGTAAAATACAGGAAAAAGATGTGTTGCAAATTTGTGACCAATTCAGGAAGCTTGACCCCTCCGACTGTGGGAAGATAACACTGCCTCATCTCTTAGGGGGCACTTTATGA 1170 0.4889 MFSFLLLLSAMEDEPFLTTTTTTTLTSQRADFHLQSSKSFDDVTAPRAARNAEIQEHLSRPSPFHSKKKKLSRCKTAPALVSMRDLKPKTPEVPKPQSSSIIRQGMCLLAMYLCVGVAIYSFNRDNFSGIETHPLVDALYFCIVTMCTIGYGDIAPLTPLTKVFACVFVLVGFGFIDILLSGLVNFVLDVQENMILTGLQMGATGREGFSARNYIVDVVKGRMRIRLKVGLALGVVVLCIGIGCLVLYFVEGLDLVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARINRRHRRMANKVLQREITVEDLLAADINHTGFISKSEYVIFKLKEMGKIQEKDVLQICDQFRKLDPSDCGKITLPHLLGGTL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0817 389 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 52 384 - -
Vra3g0817 389 Pfam Ion channel 237 305 IPR013099 -
Vra3g0817 389 Pfam Ion channel 109 187 IPR013099 -
Vra3g0817 389 PRINTS Two pore domain K+ channel signature 144 172 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vra3g0817 389 PRINTS Two pore domain K+ channel signature 267 276 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vra3g0817 389 Gene3D - 211 332 - -
Vra3g0817 389 Gene3D - 85 197 - -
Vra3g0817 389 SUPERFAMILY Voltage-gated potassium channels 219 327 - -
Vra3g0817 389 SUPERFAMILY Voltage-gated potassium channels 102 191 - -
Vra3g0817 389 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 52 384 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vra3g0817 389 ProSitePatterns EF-hand calcium-binding domain. 333 345 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0817 Vra-Chr3 8312076 8314715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0817 25 389 Ion Channels AT4G01840 63.172 1.57e-161 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0817 K05389 - gmx:100780438 608.986