Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0813 ATGTCTGGAAAAATAATTATTTCCGCTGTTTCTCTCATCCTCGTTGTAGGTGTGGCAATCGGTGTTGTGGTCACCATTAACAAAAGAAGTGAAGAATCCTCCATTGAATCCCATCAAAAATCTGTTGAGATTATATGTCAAAATACAGATGACCAAAAACTCTGCCACAACACTCTTAGTTCCGTAAAGGGTCATGACACAGCTGACCCTAAGGCCTACATCACCACAGCAGTCAAGGCCACCATGGACAGTGTCATCAAAGCGTTAAATATGAGTGATAGACTTACCACCGAGCATGGAGACATAGACAATGGTACTAAGATGGCCCTTGATGATTGCAAGGACTTGTTGCAATCTGCCATCCAAAGTCTTCAACTCAGCACTGACATGGTGAAAAATAACAACATCCAAGGTGTGCATGATCAAACTGCTGATTTCAAGAACTGGCTTAGTGCAGTTATCTCATACCAACAAGCGTGCATGGAGGGCTTCGACGATGGAAAAGAAGGTGAGAAGAAGATGAAGGAGCAGTTCCAAACAGAGAGCTTAGACCAAGTGCAGAAACTTACTTGCATCACCCTTGATATCGTGAGTGGATTGTCACACATCCTTGAGAAATTTGGGTTGAAGTTAAACCTTAAACCCGCTTCTCGTCGTCTTCTCAGTAAGGACGGGTACCCGACTTGGTTCTCTGCCTCAGATCGCAAGCTCTTGGCTCAACTTGAACGTAAAGGATGGAGATCACACATCACACCTAATGTCGTAGTTGCCCAGGATGGCTCTGGTCAGTTTAAAACCATTACCGAGGCAATTGCTTCTTACCCCAACAACTTCCAAGGTAGATATAATATCTATGTTAAGGCTGGTGTCTATGATGAATACATCACTGTTCCTAANAACGCCGTCAATATTCTCCTCTATGGTGATGGCCCTGGAAAGACCGTTGTCACTGGTCACAAGAACTTCCGTGATGGTGTGAAGACAATGCAAACTGCCACTTTTGCCAACACTGCTCANGGATTCATTGCCAAGGCAATGACATTNGAGAACACTGCTGGAGCTGACGGACACCAAGCTGTGGCTTTTAGGAANCAAGGAGACATGTCAGCAATTATTGGCTGCCACATTTTGGGTTACCAAGACACCTTGTACGCCCAAACCAACAGGCAATTCTATCGCAACTGTGTCATCTCTGGCACCATTGACTTCATCTTTGGCACCTCACCTACTGTGATCCAACACTCTGTCATCGTCATCAGGAAGCCCCTTGACAACCAATTAAACACCATTACTGCAGACGGCACATCCGAGAAGAACATGAACACTGGAATCGTTATCCAGGACTGCGAGATTGTGCCTGAAGCTGAGCTTTTCCCAGTGAGGTTCCAGATTAAGTCATACTTGGGTAGGCCATGGAAGCAGTACTCAAGGACTGTGGTGATGGAATCCACCATTGGTGACTTCCTTCACCCTGAAGGATGGTGCCCTTGGGCAGGCGAATACTTTGAAGACACCTTGTACTACGCTGAGTACAACAATGCTGGACCTGGTGCCGCGGTGGAGGGAAGAATCAAGTGGAAGGGTTATCATGGTCTCATTTCTCGCGAAGAAGCTGCCCAATTCACTCCTGGTCGATTCCTCCAAGCTGGAGTTGGCTCTGGAGCTGATTGGTTAAAAGCTCTTCATGTTCCTCATGTCCTTGACTTCGCCAAACCTTAA 1719 0.4602 MSGKIIISAVSLILVVGVAIGVVVTINKRSEESSIESHQKSVEIICQNTDDQKLCHNTLSSVKGHDTADPKAYITTAVKATMDSVIKALNMSDRLTTEHGDIDNGTKMALDDCKDLLQSAIQSLQLSTDMVKNNNIQGVHDQTADFKNWLSAVISYQQACMEGFDDGKEGEKKMKEQFQTESLDQVQKLTCITLDIVSGLSHILEKFGLKLNLKPASRRLLSKDGYPTWFSASDRKLLAQLERKGWRSHITPNVVVAQDGSGQFKTITEAIASYPNNFQGRYNIYVKAGVYDEYITVPXNAVNILLYGDGPGKTVVTGHKNFRDGVKTMQTATFANTAXGFIAKAMTXENTAGADGHQAVAFRXQGDMSAIIGCHILGYQDTLYAQTNRQFYRNCVISGTIDFIFGTSPTVIQHSVIVIRKPLDNQLNTITADGTSEKNMNTGIVIQDCEIVPEAELFPVRFQIKSYLGRPWKQYSRTVVMESTIGDFLHPEGWCPWAGEYFEDTLYYAEYNNAGPGAAVEGRIKWKGYHGLISREEAAQFTPGRFLQAGVGSGADWLKALHVPHVLDFAKP* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0813 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Vra3g0813 572 CDD PMEI-like_3 45 201 - -
Vra3g0813 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Vra3g0813 572 SMART PMEI_2 37 196 IPR006501 GO:0004857
Vra3g0813 572 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Vra3g0813 572 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Vra3g0813 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 199 IPR006501 GO:0004857
Vra3g0813 572 SUPERFAMILY Pectin lyase-like 250 551 IPR011050 -
Vra3g0813 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Vra3g0813 572 Gene3D - 247 568 IPR012334 -
Vra3g0813 572 PANTHER PECTINESTERASE 3 567 - -
Vra3g0813 572 PANTHER PECTINESTERASE 3 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0813 Vra-Chr3 8290928 8292805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0813 5 565 Carbohydrate Esterase AT3G05610 40.141 1.41e-135 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0813 K01051 - gmx:100815015 921.768