Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0812 ATGTCTGGAAAAATAATTATCTCCGCAGTTTCTCTCATCCTTGTAGTAGGTGTTGCAATTGGGGTTGTGGTTAGTGTTAACAAGAAAGGTGAGGAATCATCCATCCAATCCAATCAAAAATCTCTTGATATTATTTGTCAAAACACCGATGACAAACAACTTTGCCACAACACTTTGAGCTCCGTTAAGGGTCTTGACACTACTGATCCTAAGGCTTACATTGCCACAGCAGTGAAAGCAACCATGGACAGTGTGATCAAAGCGTTCAACATGAGTGACAGACTCACCACTGAGCACGGAGACACAGACAACAGCACTAAAATGGCCCTTGATGATTGCAAGGACTTATTGCAATATGCCATCCAAAGTCTTCAACTCAGCACTGACATGGTGCAAAATAACAACATCCAAGCCGTGCATGACCAAACTGCTGATTTCAAGAATTGGCTTAGTGCAGTTATCTCATACCAACAGGCGTGCATGGAAGGCTTCGACGATGGCAAAGAAGGTGAGAAGAAGATCAAGGATCAATTCCAAACAGAGAGCTTAGACCAAGTGCAAAAACTCACTGCCATCACCCTCGATATTGTGAGTGGATTGTCACATATCCTTGAGAAATTCGGGTTGAAGTTAAACCTTAAACCCGCTTCTCGTCGTCTTCTCAGCAAGGATGGGTACCCTACTTGGTTCTCTGCCTCAGATCGCAAGCTCTTGGCTCAGCTTGGACGTAAAGGATGGAGAGCAAACATCACACCCAATGTTGTAGTTGCCCAGGATGGCTCTGGTCAATTTAAAACCATTGCTGAGGCAATTGCTTCTTACCCCAACAACTTCCAAGGTAGATATAACATCTATGTTAAGGCTGGTGTCTATGATGAATACATCACTGTTCCTAAAAACGCCGTCAATATTCTCCTCTATGGTGATGGCCCTGGAAAGACCGTTGTCACTGGTCACAAGAACTTCCGTGATGGTGTGAAGACAATGCAAACTGCCACTTTTGCCAACACTGCTCAGGGATTCATTGCCAAGGCAATGACATTCGAGAACACTGCTGGAGCTGACGGACACCAAGCTGTGGCTTTTAGGAATCAAGGAGACATGTCAGCAATTATTGGCTGCCACATTTTGGGTTACCAAGACACCTTGTATGCCCAAACCAACAGACAATTCTATCGCAATTGTGTCATCTCCGGCACCATTGACTTCATCTTTGGCACCTCACCCACTGTGATCCAACACTCTGTCATCATCGTAAGGAAACCCCTTGACAACCAATTAAACACCATTACTGCAGACGGTACATCCGCGAAGAACATGAACACTGGAATCGTTATCCAAGATTGTGAGATTGTGCCCGAAGCTGAGCTCTTCCCAGTGAGGTTCCAAATTAAGTCCTACTTGGGCAGGCCATGGAAGCAGTACTCAAGGACTGTGGTGATGGAATCCACCATTGGTGACTTCCTTCACCCTGAAGGATGGTGCCCTTGGGCAGGCGAATACTTTGAAGACACCTTGTACTACGCTGAGTACAACAATGCTGGACCTGGTGCCGCGGTGGAGGGAAGAATCAAGTGGAAGGGTTATCACGGTCTCATTTCTCGCGAAGAAGCTGCCCAGTTCACCCCTGGACAATTCCTTCAGGCTGGAGTTGGCTCTGGAACCGATTGGTTGAAAGCTCTTCATGTTCCACATGCCCTTGACTTCGTCAAACCTTGA 1719 0.4625 MSGKIIISAVSLILVVGVAIGVVVSVNKKGEESSIQSNQKSLDIICQNTDDKQLCHNTLSSVKGLDTTDPKAYIATAVKATMDSVIKAFNMSDRLTTEHGDTDNSTKMALDDCKDLLQYAIQSLQLSTDMVQNNNIQAVHDQTADFKNWLSAVISYQQACMEGFDDGKEGEKKIKDQFQTESLDQVQKLTAITLDIVSGLSHILEKFGLKLNLKPASRRLLSKDGYPTWFSASDRKLLAQLGRKGWRANITPNVVVAQDGSGQFKTIAEAIASYPNNFQGRYNIYVKAGVYDEYITVPKNAVNILLYGDGPGKTVVTGHKNFRDGVKTMQTATFANTAQGFIAKAMTFENTAGADGHQAVAFRNQGDMSAIIGCHILGYQDTLYAQTNRQFYRNCVISGTIDFIFGTSPTVIQHSVIIVRKPLDNQLNTITADGTSAKNMNTGIVIQDCEIVPEAELFPVRFQIKSYLGRPWKQYSRTVVMESTIGDFLHPEGWCPWAGEYFEDTLYYAEYNNAGPGAAVEGRIKWKGYHGLISREEAAQFTPGQFLQAGVGSGTDWLKALHVPHALDFVKP* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0812 572 PANTHER PECTINESTERASE 3 567 - -
Vra3g0812 572 SUPERFAMILY Pectin lyase-like 251 551 IPR011050 -
Vra3g0812 572 PANTHER PECTINESTERASE 3 567 - -
Vra3g0812 572 CDD PMEI-like_3 45 201 - -
Vra3g0812 572 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Vra3g0812 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Vra3g0812 572 SMART PMEI_2 37 196 IPR006501 GO:0004857
Vra3g0812 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Vra3g0812 572 Pfam Plant invertase/pectin methylesterase inhibitor 44 196 IPR006501 GO:0004857
Vra3g0812 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 200 IPR035513 -
Vra3g0812 572 Gene3D - 247 569 IPR012334 -
Vra3g0812 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0812 Vra-Chr3 8284824 8286872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0812 5 565 Carbohydrate Esterase AT3G05610 40.845 6.56e-139 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0812 K01051 - gmx:100815015 947.962