Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0811 ATGTCTGGGAAAATAGTTGTCTCTGTTGTTTCTCTCATTCTCGTAGTAGGTGTTGCAATCGGTGTTGTGGTTACTGTTAATAAGAAAGGTGGGGAACCCTCCATCCAGTCCGATCAAAAATCCGTTGAGATTATCTGTCAAAACACTGATGACAAAAACCTTTGCCACAACACTCTCAGCTCTGTCAAGGGTCTTGACGCCGCTGACCCTAAGGCTTACATTGCCACGGCAGTGAAAGCCACCATGGACAGCGTCATCAAAGCGTTCAACATGAGTGACAGGCTCGCCACCGAGCACGCAGACAAAGACAACGGCACAAAAATGGCCATTGATGATTGCAAGGACTTATTACAATCAGCCATCCAAAGTCTTCAACTCAGCACTGACATGGTGCAAAATAACAACATCCATGCCGTGCATGACCAAAGTGCTGATTTCAAGAACTGGCTTAGTGCAGTTATCTCATACCAACAGGCGTGCATGGAAGGATTCGACGATGGCAAAGAAGGTGAGAAGAAGATCAAGGAGCAGTTCCAAATAGAGAGCTTAGACAAGGTGCAAAAACTCACTGCCATCACCCTTGATATCGTGAGTGGTTTATCACACATCCTCGAAAAATTTGGGTTGAAGTTGAACCTTAAACCCGCCTCCCGTCGTCTTCTCAGTAAGGACGGGTACCCCACTTGGTTCTCTGCTTCAGATCGCAAGCTCTTGGCTCAACTTGGACGTAAAGGATGGAGATCACACATCACACCTAATGTCGTAGTTGCCCAGGATGGCTCTGGTCAGTTTAAAACCATTGCCGAGGCAATTGCTTCTTACCCCAACAACTTCCAAGGTAGATATAATATCTATGTTAAGGCTGGTGTCTATGATGAATACATCACTGTTCCTAAGAACGCCGTCAATATTCTCCTCTATGGTGATGGCCCTGGAAAGACCGTTGTCACTGGTCACAAGAACTTCCGTGATGGTGTGAAGACAATGCAAACTGCCACTTTTGCCAACACTGCTCAAGGATTCATTGCCAAGGCAATGACATTTGAGAACACTGCTGGAGCTGACGGACACCAAGCTGTGGCTTTTAGGAACCAAGGAGACATGTCAGCAATTATTGAAGCTGCCCAGTTCACCCCTGGCCAATTCCTCCAGGCTGGAGTTGGCTCTGGAGCCGATTGGTTGAAAGCTCTTCATGTTCCTCACGCCCTTGACTTCGTCAAACCTTGA 1227 0.4703 MSGKIVVSVVSLILVVGVAIGVVVTVNKKGGEPSIQSDQKSVEIICQNTDDKNLCHNTLSSVKGLDAADPKAYIATAVKATMDSVIKAFNMSDRLATEHADKDNGTKMAIDDCKDLLQSAIQSLQLSTDMVQNNNIHAVHDQSADFKNWLSAVISYQQACMEGFDDGKEGEKKIKEQFQIESLDKVQKLTAITLDIVSGLSHILEKFGLKLNLKPASRRLLSKDGYPTWFSASDRKLLAQLGRKGWRSHITPNVVVAQDGSGQFKTIAEAIASYPNNFQGRYNIYVKAGVYDEYITVPKNAVNILLYGDGPGKTVVTGHKNFRDGVKTMQTATFANTAQGFIAKAMTFENTAGADGHQAVAFRNQGDMSAIIEAAQFTPGQFLQAGVGSGADWLKALHVPHALDFVKP* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0811 408 Gene3D - 247 400 IPR012334 -
Vra3g0811 408 Pfam Pectinesterase 253 373 IPR000070 GO:0030599|GO:0042545
Vra3g0811 408 CDD PMEI-like_3 45 201 - -
Vra3g0811 408 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Vra3g0811 408 SMART PMEI_2 37 196 IPR006501 GO:0004857
Vra3g0811 408 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 199 IPR006501 GO:0004857
Vra3g0811 408 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Vra3g0811 408 PANTHER PECTINESTERASE 3 375 - -
Vra3g0811 408 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Vra3g0811 408 SUPERFAMILY Pectin lyase-like 250 372 IPR011050 -
Vra3g0811 408 PANTHER PECTINESTERASE 3 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0811 Vra-Chr3 8279223 8281038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0811 5 369 Carbohydrate Esterase AT3G05610 36.729 3.98e-65 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0811 K01051 - gmx:100781507 556.599