Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0808 ATGAGTTGTTTCAGCTGTTGCGAAGAAGATGACTTCCAGAAGCATGCCGAAAGTGGAGGACAACATCTTGTAAAAAACTCAACAGGAAACGATGGAAATGGTCGGGCATCTGAAACTGCAAAGCAGGGCATTCAAGCTGTTAAAATTCAGCCCATTGAAGTTCCCGAATTACAAGTGGATGAACTCAAAGAAATTACTGACGGCTTTGGGGAAAGTTCTTTGATTGGAGAGGGATCCTATGGAAGAGTGTATTACGGTGTTCTGAAAAGTGGGCAGGCTGCAGCAATCAAGAAATTAGATGCCAGTAAACAGCCAGATGATGAGTTTTTAGCCCAGGTCTCGATGGTGTCACGGCTGAAACATGACAATTTTGTTCAATTGCTTGGTTATTGCATTGATGGAAACTCCCGAATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTCTGCATGGACGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCAGTTCTAACATGGACACAAAGAGTTAAAATTGCTGTAGGGGCAGCCAAAGGGCTTGAGTACTTGCATGAGAGGGCTGATCCTCACATTATCCATCGGGACATCAAGTCAAGTAATGTACTCATCTTTGACGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCAGCACGACTCCATTCTACTCGAGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGTCAATTGAATGCCAAAAGTGATGTATACAGTTTTGGTGTCGTCCTCCTGGAACTTTTGACAGGAAGGAAGCCTGTTGATCATACATTACCACGTGGGCAACAGAGCTTGGTTACTTGGGCTACTCCAAGACTCAGTGAGGATAAAGTTAGACAGTGTGTAGATGCAAGACTAGGAGGAGATTACCCTCCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCCCTGTGTGTGCAATACGAAGCTGATTTCAGACCAAACATGAGTATTGTTGTCAAAGCTCTTCAACCTTTGTTGAATGCAAGACATGGGCCCGCTGGTGAAGCTTCAAACTAA 1086 0.4392 MSCFSCCEEDDFQKHAESGGQHLVKNSTGNDGNGRASETAKQGIQAVKIQPIEVPELQVDELKEITDGFGESSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCIDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWTQRVKIAVGAAKGLEYLHERADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDARLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARHGPAGEASN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0808 361 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Vra3g0808 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vra3g0808 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Vra3g0808 361 SUPERFAMILY Protein kinase-like (PK-like) 49 345 IPR011009 -
Vra3g0808 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0808 361 CDD STKc_IRAK 75 348 - -
Vra3g0808 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0808 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Vra3g0808 361 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Vra3g0808 361 Gene3D Transferase(Phosphotransferase) domain 1 144 356 - -
Vra3g0808 361 MobiDBLite consensus disorder prediction 20 40 - -
Vra3g0808 361 PIRSF ILK 12 353 - -
Vra3g0808 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vra3g0808 361 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0808 Vra-Chr3 8259589 8262756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0808 48 353 Receptor kinase-like Gene Family AT3G58690 49.196 3.67e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vra3g0808 PK_Tyr_Ser-Thr 8.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0808 K13436 - gmx:100499642 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2725 7 47448016 47459158 Vra3g0808 3 8259589 8262756 ECH
Vra3g0808 3 8259589 8262756 Vra3g0808 3 8259589 8262756 ECH