Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0805 ATGGATGACTGTTGTGCTGTTTGCGCAGAGCCTTTGGAATGGGTCGCCTATGGACCCTGTTTGCACCGGGAGGTGTGCTCCACGTGCGTCGCTCGCCTCCGTTTTATTTGCGACAATCGCTGTTGCTGCATCTGCAAGACCGAATGCAACCACGTATTCGTCACCAAGGCGCTAGGAGATTATACAAAGATGATTAATGATTTTGCTGCCCTTCCTTCGGAGGTAAGGGAGGGCAAGATTGGATCATATTGGTACCATGAGGATACAAATGCATTTTTTGATGATGTGGACCATTACAAGATGATCAAGGCTATGTGTAGACTTTCGTGCAGTATATGTGACAAGACGGATGAACAACCACAGGGTTCTGCTTCAAGGCGACGAGAACAGTTTAAGAATATAGGGCAGTTGAAGGGTCATATATTCCACCGTCACAAGTTGCATATGTGCAGTTTGTGTTTGGAGGGCAGGAAGGTTTTTATATGTGAGCAAAAGCTATATACCAGAGCACAGTTGAATCAACACATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTCATGGGGCATCCCATATGTGAATATTGCAGAACCCGATTTTATGGAGACAATGAATTGTACGTGCATATGTCTACAGAGCATTATACTTGTCATATATGCCAAAGGCAGCATACAGGGCAGTATGACTACTTTAAGAATTATGATGACCTAGAGATTCACTTCCGGAAAGAGCACTTCTTATGTGAAGATGAGGCTTGTCTTGCTAAGAAATTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAAGCATAATGCTATCGAACATGGAGGACGGATGTCACGATCTAAGCGGAATGCTGCTCTTCAGATTCCAACTAGCTTCCGATACAGACATGGTAACGAACAAGAGCAACGCCGTGGAAGAAATCGTTCTTTTCGTCGTGATTTTACTGAAAACCATGAAAACCAACTTGCGATGGCCATTGAAGCTAGTCTAGAAACAGCTAATGTAGAGCAAACATTTCGTAATCAATCAGCATCAGGTAGTAGGCAAGTTGCTGTTGATGATGGGAATGGAGACATTGATTCTCTCATTCAGCCATTTGAATCATTGGCTGTTGCTGGTTCTGAAGCATCTTCAAGATACCTTCAAGCCCTGGGACATAGCTCAAGGAGTGGACCTCTGGAGGATTCTTCCTTTCCACCACTACCCATAACTTCCAACAATGGCCATCAAGGATCCAAACAGGAAGTGGAAGGCTCATCTAGTAATTCCATGGCTGCACGACTGCGTCACCATAACAACAGAACTGTAACAGTTATTAATTCTGGTAATGCTTGGCCAGCAGCAGGTCGTGGACTGGTACAACCAGCAAGTAATCCTTCACAATTTCGACAGTCATCAAATAATGCTCTGGGTCTTTCTCGTAATTCTGGGCAGACAAAGAAGACTGTAATTAACAGTGGACTTTCACCATCAACTTATGCTGGTTCTATTCAGTCTACCCAAAGAACTTCTCGTGGACACTTACCTGGTGGTTCATCGAGGGACACACGTGACAATGTTAGAATTGTTCACTCTGCATCTGCCCCTAATCTCATGGAGAACAATTCTGTTGAAGCTTCACTATCTGATTTTCCTCCTGTTTCTGCTGCACAAGCGAGCAAGATAGCTGCTAGCAGTCATTCTTCATTGAATGTGGAAAATGTACAGTCTGCTAACCAGTCCCTGGTTGAAAAGATTCGACGTGCTCTTGATTTTGATGAAGAAAGATACAGTATGTTTAAGGACATATCTGCCCAATATGGCCAAGGCACAATAGATACGGAAACGTATATGGACTATGTGCAGAACTTTGGCCTGTCTCGTCTTGTGCTTGAGTTGGCAAGATCATGCCCTGATACTCAGAAGCGGGCAGAGCTTGTTAGTGCTAGCTTGCAAAGAGATGTTTTATTGGAAAATAACTTGGTTCAAAGCAGCACAAGCACCCATCGCAAAGACAGTAATGTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACCCCACAGAGAAATTAGCAGATAACTTTTTAAGCACCGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAGGTGGAGGTGCTATCACGGGATGATTATCGAAGCGACAGAGGCAAATTAAAAATCGAACAGCGGACTGATACCAATTCTGGAAGTCAACCTGCGGTGAAGCTTAGTGGGAAGACTGAAACATCAAATGGCAGTTTATCTACTCAAGTTAGAGAGGATGGTGGTGGTGGGAACAAGCAACGCAAGAAAGGTTCAAAGTTCCTGAGAGTGCGACTTGGTGATGGTTCTGCTTCGGCCCTTTTTGATCAACCTGATCTTGGAAAAACTGACCACTCAGAAGTTAACGATGAACCTGGAGGAGGGCCACCTGTGCGTGGTGTTTGGCGAAAAGGGGGAGGTCATAAACTTTTTCCCTAA 2505 0.4407 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDNRCCCICKTECNHVFVTKALGDYTKMINDFAALPSEVREGKIGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCSICDKTDEQPQGSASRRREQFKNIGQLKGHIFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPICEYCRTRFYGDNELYVHMSTEHYTCHICQRQHTGQYDYFKNYDDLEIHFRKEHFLCEDEACLAKKFVVFQSEAEMKKHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEQEQRRGRNRSFRRDFTENHENQLAMAIEASLETANVEQTFRNQSASGSRQVAVDDGNGDIDSLIQPFESLAVAGSEASSRYLQALGHSSRSGPLEDSSFPPLPITSNNGHQGSKQEVEGSSSNSMAARLRHHNNRTVTVINSGNAWPAAGRGLVQPASNPSQFRQSSNNALGLSRNSGQTKKTVINSGLSPSTYAGSIQSTQRTSRGHLPGGSSRDTRDNVRIVHSASAPNLMENNSVEASLSDFPPVSAAQASKIAASSHSSLNVENVQSANQSLVEKIRRALDFDEERYSMFKDISAQYGQGTIDTETYMDYVQNFGLSRLVLELARSCPDTQKRAELVSASLQRDVLLENNLVQSSTSTHRKDSNVNKKGKGKSVDSRGSNPTEKLADNFLSTVHQLQANYKSSEEKVEVLSRDDYRSDRGKLKIEQRTDTNSGSQPAVKLSGKTETSNGSLSTQVREDGGGGNKQRKKGSKFLRVRLGDGSASALFDQPDLGKTDHSEVNDEPGGGPPVRGVWRKGGGHKLFP* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0805 834 PANTHER EBR1 1 832 - -
Vra3g0805 834 MobiDBLite consensus disorder prediction 738 770 - -
Vra3g0805 834 CDD RING-HC_ZNF598 5 46 IPR041888 -
Vra3g0805 834 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Vra3g0805 834 MobiDBLite consensus disorder prediction 457 527 - -
Vra3g0805 834 Coils Coil 704 724 - -
Vra3g0805 834 MobiDBLite consensus disorder prediction 716 737 - -
Vra3g0805 834 MobiDBLite consensus disorder prediction 712 834 - -
Vra3g0805 834 MobiDBLite consensus disorder prediction 462 518 - -
Vra3g0805 834 MobiDBLite consensus disorder prediction 393 432 - -
Vra3g0805 834 MobiDBLite consensus disorder prediction 663 695 - -
Vra3g0805 834 ProSitePatterns Zinc finger C2H2 type domain signature. 199 220 IPR013087 -
Vra3g0805 834 PANTHER ZINC FINGER PROTEIN 598 1 832 IPR044288 GO:0061630|GO:0072344
Vra3g0805 834 SMART c2h2final6 108 145 IPR013087 -
Vra3g0805 834 SMART c2h2final6 197 220 IPR013087 -
Vra3g0805 834 SMART c2h2final6 221 251 IPR013087 -
Vra3g0805 834 SMART c2h2final6 252 281 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0805 1 833 C2H2 Transcription Factor Family AT3G62240 50.345 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0805 K22381 - gmx:100780426 1378.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0805 3 8215514 8219990 Vra3g0805 3 8215514 8219990 ECH