Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0800 ATGTTCAGAATGAAGCATTCTCCTATTTCACCACTAGCATTCTCTACATTTTTCCTTACTTTATTTCTTCTGGTCCAAGCCAGGCATCATTCTCATACAAAACACAAGCACTCACATTCTCATAAATCTTCTAAACATTCAAATCCTGCACCTCCTACCCCTCCTCATAATGAGAACAATAACAATTCTTCTGTGGTTTTGGATGTACGAACATTTGGAGCAATAGGAGATGGAAAAACAGATGATACAGAGTCATTTAAGATGGCATGGGACACTGCTTGCCAGAGTGAATCAGCAGTTAATGCTATTCTTGTACCTCAAGGTTTCTCTTTCCTCATTCAGTCAACTATCTTCACTGGTCCTTGTCAAAGTTTCATGGTGTTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCCGAATATTGGCCAAAGAACAACAGTAGGCACCAATGGTTGGTGTTTTATAGAATCAATGGAATGTCACTGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTCCCATGTAAGCCTCACAAGGCCATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCATGGACTAAGGATAAAGAACAGCCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCACATAGAATCAATCTACATAACAGCTCCAAAACTTAGCCCCAATACTGATGGAATTCACATAGAAAATACAGATGAAGTGAAAATATACAATTCTGTTATTTCTAATGGTGATGATTGTGTTTCCATTGGATCCGGCTGCAATGATGTCGATATTAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGGAATCACAACTCTCGAGCCTGTGTTTCAAAGGTTGTGGTGAGAGATTCACTGATAAAAATGACAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTGTCTGGAGTGACATTCAACAATATTCATATGGTTAGTGTAAGAAATCCAATCATAATTGACCAATTCTACTGCCTCACCAAGGATTGCACCAACAAGACCTCTGCAGTATCTGTATCAAATATTATTTACACAAACATAAGGGGTACTTATGATATAAGGAGCCCCCCAATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGAAATTGAGCTTCTTCCAGCTGAAGGAGACATAGTGCATGACCCTTTCTGCTGGAATGCATATGGAGATTTGGAGACACTGACCATTCCACCAGTCTCATGCTTGCTCGAGGGCACTCCTCAATCCGTGTCAGACTTTGACATAACTCGTTGCTGA 1347 0.412 MFRMKHSPISPLAFSTFFLTLFLLVQARHHSHTKHKHSHSHKSSKHSNPAPPTPPHNENNNNSSVVLDVRTFGAIGDGKTDDTESFKMAWDTACQSESAVNAILVPQGFSFLIQSTIFTGPCQSFMVLKVDGTLMPPDGPEYWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKAIRFFMSSNLTVHGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTDEVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHNSRACVSKVVVRDSLIKMTDNGVRIKTWQGGSGSVSGVTFNNIHMVSVRNPIIIDQFYCLTKDCTNKTSAVSVSNIIYTNIRGTYDIRSPPMRFACSDSVPCTNLTLSEIELLPAEGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVSDFDITRC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0800 448 SMART pbh1 215 241 IPR006626 -
Vra3g0800 448 SMART pbh1 295 316 IPR006626 -
Vra3g0800 448 SMART pbh1 324 345 IPR006626 -
Vra3g0800 448 SMART pbh1 242 263 IPR006626 -
Vra3g0800 448 SMART pbh1 265 285 IPR006626 -
Vra3g0800 448 MobiDBLite consensus disorder prediction 32 63 - -
Vra3g0800 448 PANTHER - 9 438 - -
Vra3g0800 448 Pfam Glycosyl hydrolases family 28 97 401 IPR000743 GO:0004650|GO:0005975
Vra3g0800 448 SUPERFAMILY Pectin lyase-like 65 439 IPR011050 -
Vra3g0800 448 Gene3D - 52 438 IPR012334 -
Vra3g0800 448 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 438 - -
Vra3g0800 448 ProSitePatterns Polygalacturonase active site. 272 285 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0800 Vra-Chr3 8186052 8188949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0800 66 448 Glycoside Hydrolase AT1G02460 69.077 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0800 - - gmx:100778836 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0800 3 8186052 8188949 Vra3g0800 3 8186052 8188949 ECH
Vra7g2880 7 48955593 48959275 Vra3g0800 3 8186052 8188949 ECH
Vra3g0800 3 8186052 8188949 Vra8g1330 8 29403122 29405504 PCT