Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0793 ATGGATGTTAACATGAAGAAACGGTCCGCAGAAGAGGTGAATAGTGAAGACACTAGAAAAGGTCCATGGAGCGTTGAAGAGGACACTCTTCTCCAAAATTACGTCGCCACCCACGGCGACGGTCGTTGGAATTCCGTCGCACGCTGTGCAGGCCTTAAGAGATCAGGGAAAAGTTGCAGGTTGAGATGGTTAAACTACTTGCGGCCCGATGTTCGTCGTGGAAATATAACACTCCAGGAACAGATAACCATTCTGGAGCTTCACTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCCGGAAGAACGGACAACGAAATAAAGAATTATTGGAGGACTCGTGTGCTTAAGCAAGCAAGGAATCTGAAGTGTGACGTGGACAGTGAACAGTTCAAAGATGCCTTACGTTACGTGTGGATGCCCCGTTTGATTGAGCGGATTCAACCGTCATCGGAAACTCACGACCCACCCGATGTGTCCCCCTCCGAACTTTACCCAAGCCCAACTCCTTCGCTCCACCACCAAAACGGGTTACACGGTTTGTGTTCAGGTTCCAATGCCTTGGACTTATCAAGTGCCAAGTTGGAGGCTCCTTTAGAGTCTGAAGATATGGGTCATAATAATGTTTCAGTTCCGGGAGTGTGTGAAAATATGAATGATCGAGACTTGGAACAGGGGAATATCACGCTACCTTTTGCTGGTGGGGACTCAATGGAGAGTTTGTGGGATGATGAGAATCTGTGGCTTATGCAGCAACTTTGTGATGATCTGGAAATTAAAGACAATTTCCTTGCACATGGTTCGTCGGTGGCCAGTAGTGCAGGTCTATGTAGGTGGAAGCACGATTTAGGGATATGTGGTGGTTGCTCAAATGGTGCTTTCATGGCTTGCATATCTGAGCCTGGTCGCTCTAGCGAGGTGGGCAAATATGTGTTTTTGTGGTGTCGCACGCGTCCTGGTGCTCACAACAACTTTGGTGTTCACTTGCGTGTGCGTTCTTGTGATCGTAGCAGCTCTGGTGTTCACTCGTGGTGGAACTGTGTGGTTGTGCACATATGTTTTGACGAGGTAGTCACATTGTGGTTCTAG 1098 0.4845 MDVNMKKRSAEEVNSEDTRKGPWSVEEDTLLQNYVATHGDGRWNSVARCAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILELHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVLKQARNLKCDVDSEQFKDALRYVWMPRLIERIQPSSETHDPPDVSPSELYPSPTPSLHHQNGLHGLCSGSNALDLSSAKLEAPLESEDMGHNNVSVPGVCENMNDRDLEQGNITLPFAGGDSMESLWDDENLWLMQQLCDDLEIKDNFLAHGSSVASSAGLCRWKHDLGICGGCSNGAFMACISEPGRSSEVGKYVFLWCRTRPGAHNNFGVHLRVRSCDRSSSGVHSWWNCVVVHICFDEVVTLWF* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0793 365 MobiDBLite consensus disorder prediction 151 181 - -
Vra3g0793 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Vra3g0793 365 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vra3g0793 365 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vra3g0793 365 CDD SANT 77 116 IPR001005 -
Vra3g0793 365 Gene3D - 77 118 - -
Vra3g0793 365 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 8 254 - -
Vra3g0793 365 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 254 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra3g0793 365 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vra3g0793 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vra3g0793 365 CDD SANT 22 67 IPR001005 -
Vra3g0793 365 Gene3D - 21 72 - -
Vra3g0793 365 MobiDBLite consensus disorder prediction 1 21 - -
Vra3g0793 365 SMART sant 19 69 IPR001005 -
Vra3g0793 365 SMART sant 72 120 IPR001005 -
Vra3g0793 365 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vra3g0793 365 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0793 Vra-Chr3 8111659 8114214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0793 17 259 MYB Transcription Factor Family AT2G47190 48.872 6.25e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g0793 Myb_DNA-binding 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0793 K09422 - gmx:100797220 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0793 3 8111659 8114214 Vra3g0793 3 8111659 8114214 ECH
Vra3g0793 3 8111659 8114214 Vra8g1325 8 29292417 29293580 PCT