Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0792 ATGGAGAGGAGTTTAGCAGAAAATGGTTCATCTGGAACGTATGGAAGCAGTGAAGAGGAGATGTCAATAACGAAAGGTCCATGGACAGAGGAAGAAGATTCAGTTCTCTTCGATTACATCACAGTTCACGGTGAAGGCCACTGGAACTCTGTCGCTCGCTACACAGGTCTCAAACGAACGGGAAAAAGCTGCAGACTGAGATGGTTGAACTACTTGCGTCCCAACGTTCGACGCGGGAACATAACGCTCCAAGAACAGCTCATGATTCTTGACCTCCATTCCCGATGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTACCGGGGAGAACAGACAACGAGATTAAGAACTACTGGAGAACTAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGACGTGAACAGCAAACAATTCAGAGACACGTTGCGTTTTGTGTGGATGCCACGTATGCTAGAACGGATTCAGGCTCAGGCCTCATCATCGGCCCAAGCCCAAACCACCTTAGTGTCCAACGTTCAAGCCCACAGCGACCCTTGTGGTGGAGCCACCGCCACCGCCACTGCCTCGGCCAGTGACGCGGGTTTTCTGTCAGAGGCCTCATCGGCGGTTGATGTCCACGCCCACTCTCTCTCTGACTCCGGCGCGTCTTATAGTTTAATGGGTGGTGGAAGTTGGTGTTCGCATGGTGCAGAAGAAGGTTATGGCAGGGTATGGGAAGAGAGAAACAATGGGTACTCGGAGATAGCAGGAAGTGGTTTTGGTGGTGTTGACATGTGGACGGAGGAGAATATTTGCTTCTTGCAGCAGCAGCTCGCTGATGACTTCTGA 831 0.509 MERSLAENGSSGTYGSSEEEMSITKGPWTEEEDSVLFDYITVHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLMILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSSAQAQTTLVSNVQAHSDPCGGATATATASASDAGFLSEASSAVDVHAHSLSDSGASYSLMGGGSWCSHGAEEGYGRVWEERNNGYSEIAGSGFGGVDMWTEENICFLQQQLADDF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0792 276 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 14 202 - -
Vra3g0792 276 CDD SANT 82 121 IPR001005 -
Vra3g0792 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Vra3g0792 276 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Vra3g0792 276 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 202 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra3g0792 276 Gene3D - 24 77 - -
Vra3g0792 276 MobiDBLite consensus disorder prediction 1 23 - -
Vra3g0792 276 CDD SANT 27 72 IPR001005 -
Vra3g0792 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Vra3g0792 276 SMART sant 24 74 IPR001005 -
Vra3g0792 276 SMART sant 77 125 IPR001005 -
Vra3g0792 276 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Vra3g0792 276 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Vra3g0792 276 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Vra3g0792 276 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Vra3g0792 276 Gene3D - 82 123 - -
Vra3g0792 276 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0792 Vra-Chr3 8098868 8100308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0792 1 275 MYB Transcription Factor Family AT2G47190 47.552 1.60e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g0792 Myb_DNA-binding 8.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0792 K09422 - gmx:100819467 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0792 3 8098868 8100308 Vra8g1324 8 29254143 29255581 PCT