Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0784 ATGCCACCGGCTGCCACGTTGTCCGTACCACCCACTAACCTACAATTGCCGGTGGCCTATTTGGTGTCACTGTTTTTGGCTTTAACCATGGAACATATGTATGTATGTATTCATATTCGTTCATTACTACTTGCTTCTTTCACTTCCAACTCATTTCCACAATCACCTTTCACTTTCTTCCAACCCACAAAGCCGCGCTATCTATCTATATCTATCTATCTTTCTTTCTTTTCTTTCTTTCTCTCTTCTTTCATCCACCTAACCAGATCGATCGACCCTATCATATATTTATCGTATCTATCTCACTGCTCTTGTAGCTGTTTGAATGAAGGATTTCAGATTGGGCATTTGAGAGATAAGTATATATATATGGATAATAATAAGGAGATGATGACGATGATGATGATGGGTGTGAAGAAGAAGGAGGATTATGCCATAGGGTCGTCTTCCTTCCATTGCAATTACCCATTCCTTGATTTCTCTGATGACAAGGGCTCTTTAGGGTTTATGGAGTTGCTGGGTGTGCAAGAATACAGTCCTCTGCTTGATTTGCCATTAGGGTCCAACATGGAAGTGCCTCAAACCTCTGATCTTAAGGAACCACCTCAGACTAAGAAAGATTGGACCGAGGTAACCAACCAGCAACCTGCGACTCCGAACTCTTCATCCATTTCCTCCGCGTCCAGTGAGGCTCTCAACGATGAACAAAAGAATAGAACTGTAGACCAAACACATGATGAGCACAAAAAGACAAAGGAACAATTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCGTGTAATGTGAAGAAACGCGTAGAGCGATCTTTTAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAACACACTCATCCAAGCCCGGTTATGGGTCGCTCCAACAACTTTGGTACGCTAATGTCTGGATCTGAGAACTACATGTCCCAATATTATCAGCAGCACCATCAACAACAACTTCATGTCGATGCATTGTCTTCTCTTAGTTTCCTCTCTCCGAAGAATGTCACATTTCCTCAACAGACAGCGTTGTTGAGTGACTATGGCCGTCTTCAAGATGTTGTTCCTTCACATATATTCAAACAAGACTAG 1248 0.4327 MPPAATLSVPPTNLQLPVAYLVSLFLALTMEHMYVCIHIRSLLLASFTSNSFPQSPFTFFQPTKPRYLSISIYLSFFSFFLSSFIHLTRSIDPIIYLSYLSHCSCSCLNEGFQIGHLRDKYIYMDNNKEMMTMMMMGVKKKEDYAIGSSSFHCNYPFLDFSDDKGSLGFMELLGVQEYSPLLDLPLGSNMEVPQTSDLKEPPQTKKDWTEVTNQQPATPNSSSISSASSEALNDEQKNRTVDQTHDEHKKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFSDPSIVVTTYEGQHTHPSPVMGRSNNFGTLMSGSENYMSQYYQQHHQQQLHVDALSSLSFLSPKNVTFPQQTALLSDYGRLQDVVPSHIFKQD* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0784 415 PANTHER WRKY TRANSCRIPTION FACTOR 158 389 - -
Vra3g0784 415 Pfam WRKY DNA -binding domain 282 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0784 415 SUPERFAMILY WRKY DNA-binding domain 273 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0784 415 MobiDBLite consensus disorder prediction 207 234 - -
Vra3g0784 415 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 158 389 IPR044810 GO:0003700
Vra3g0784 415 Gene3D WRKY domain 266 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0784 415 MobiDBLite consensus disorder prediction 189 265 - -
Vra3g0784 415 Coils Coil 245 265 - -
Vra3g0784 415 SMART WRKY_cls 281 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0784 415 MobiDBLite consensus disorder prediction 235 265 - -
Vra3g0784 415 ProSiteProfiles WRKY domain profile. 276 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0784 Vra-Chr3 8043878 8045753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0784 159 415 WRKY Transcription Factor Family AT2G47260 44.164 3.36e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra3g0784 WRKY 3.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0784 - - vra:106757666 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0784 3 8043878 8045753 Vra3g0784 3 8043878 8045753 ECH
Vra3g0784 3 8043878 8045753 Vra8g1314 8 29094445 29096632 PCT