Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0780 ATGTCGAAGAGGAAGTTCGGATTCGAAGGCTTCGGCATAAACCGCCAATCGACCTACAGCTTCGAGAGATCCCAGGCTCCTCAGCGACTCTACGTCCCTCCTTCCTCCCGTCACGGCCACGACAACTACGAGGACACCGACCTCGACAACATTGACTACGCCGACAACAACAACGACGAAGGGAACAAGAACAGCAACGATGACGACGAAATTGACCCTCTCGACGCCTTCATGGAGGGGATTCACGAGGAGATGAAGGCGGCGCCGCCACCCAAGCCGAAGGAGAAGGCTGAGGACCGGTACCGGGACGACGACGACGACCCCATGGAGAGCTTTCTGAAGGCAAAGAAGGATTTAGGGCTGACTCTCGCTTCCGAGGCGCTGCACGCTGGGTACGATTCTGATGAGGAGGTTTATGCTGCTGCCAAAGCCGTGGACGCTGGTATGATCGAGTATGATTCCGACGATAACCCTATTATTATTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTCGATCACTCTTCCATTGACTACGAACCCTTCAATAAGGATTTTTATGAGGAGACACCTTCAATATCAGGTATGAGTGAGCAGGACGTAAGCGAATACCGGAAGAGTTTGGCTATTCGGGTATCTGGTTTTGATGTTCCCAAGCCAATAAAGGCTTTTGAGGACTGTGGATTTCCGTCTCAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAGCCGACATCTATACAATGTCAGGCTTTGCCGGTTGTGCTTTCCGGCAGGGATATTATTGGTATAGCTAAAACTGGTTCTGGTAAAACGGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTGAGAAGGAAGAGGGGCCTATAGGGGTGATATGTGCACCTACCCGAGAATTGGCTCATCAGATATACCTGGAGGCCAAGAAATTCGCAAAAGCGTATGGGGTACGTGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAAGCTGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCATTGACAATGACGAGAGCAACTTACCTGGTGCTTGATGAGGCGGATCGAATGTTTGATCTGGGGTTTGAACCTCAAGTAAGGTCCATTGTTGGGCAGATTAGGCCAGACCGTCAAACATTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACCGATCCTATCAGAGTAACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTTGTGTGATTCCTTCTGATACTGAAAAGTTGCCTTGGCTTCTGGAAAAGCTACCTGAAATGATTGATCAAGGTGATACTCTAGTTTTTGCTTCAAAGAAGGCCACTGTGGATGAAATAGAATCGCAGTTGGCTCAAAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAGAAGTTTAAATCCGGTCTCTACCATGTGCTCATTGCAACTGATGTTGCAGCCCGGGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAGGATATGGACATGCATGTTCATCGCATTGGAAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCGTACACTCTTATAACTCAGAAAGAAGCACGATTTGCTGGTGAATTGGTCAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCGTGGAGTTGATGGATCTTGCGATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAGAGGTAGAGGTGGTGGCGGAGGTCGCCGTGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCCGAATCTAACAACGCACCATCTAACCCAGTTCCTACTCGATCTGCCGCCGTAAATTCTCTGCGGACTGGAATGATGTCACAATTTAGGAACAACTTTGTTGCTGCTTCATCGAACTCTCAGAATCAAGGATTCGGTAACAATACAAGCATGGCTGCTAATAAGAGACCGGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGTGGTGACGTGAATACGTACCAGCACACTACTTCACCCAGTCCTGCTTCGTCCGTGGTAAATTCCAGCACTCAAGGTTCTGGAGTAAATTCTGGTCAGAAGAGCATGAATAGTTCTAAACCCAAAGAGAGGCGGAGGCCATCAGGTTGGGATAGATAA 2301 0.4724 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYADNNNDEGNKNSNDDDEIDPLDAFMEGIHEEMKAAPPPKPKEKAEDRYRDDDDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIIIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVCVIPSDTEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGRRGVRGVDFGLGIGYNPESNNAPSNPVPTRSAAVNSLRTGMMSQFRNNFVAASSNSQNQGFGNNTSMAANKRPALPGFVSGGSIGGDVNTYQHTTSPSPASSVVNSSTQGSGVNSGQKSMNSSKPKERRRPSGWDR* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0780 766 MobiDBLite consensus disorder prediction 691 766 - -
Vra3g0780 766 MobiDBLite consensus disorder prediction 1 107 - -
Vra3g0780 766 SMART ultradead3 241 443 IPR014001 -
Vra3g0780 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 453 602 IPR001650 -
Vra3g0780 766 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 650 - -
Vra3g0780 766 MobiDBLite consensus disorder prediction 13 31 - -
Vra3g0780 766 Gene3D - 431 606 IPR027417 -
Vra3g0780 766 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 650 - -
Vra3g0780 766 MobiDBLite consensus disorder prediction 609 661 - -
Vra3g0780 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 597 IPR027417 -
Vra3g0780 766 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Vra3g0780 766 MobiDBLite consensus disorder prediction 613 628 - -
Vra3g0780 766 CDD SF2_C_DEAD 440 572 - -
Vra3g0780 766 MobiDBLite consensus disorder prediction 61 107 - -
Vra3g0780 766 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 374 382 IPR000629 -
Vra3g0780 766 SMART helicmild6 481 562 IPR001650 -
Vra3g0780 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 431 IPR027417 -
Vra3g0780 766 MobiDBLite consensus disorder prediction 752 766 - -
Vra3g0780 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 428 IPR014001 -
Vra3g0780 766 CDD DEADc_DDX42 233 429 - -
Vra3g0780 766 MobiDBLite consensus disorder prediction 715 751 - -
Vra3g0780 766 MobiDBLite consensus disorder prediction 647 661 - -
Vra3g0780 766 Gene3D - 185 430 IPR027417 -
Vra3g0780 766 Pfam DEAD/DEAH box helicase 246 417 IPR011545 GO:0003676|GO:0005524
Vra3g0780 766 Pfam Helicase conserved C-terminal domain 457 562 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0780 Vra-Chr3 7990819 7994935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0780 219 572 Eukaryotic Initiation Factors Gene Family AT3G19760 32.773 3.40e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0780 K12835 - gmx:100814854 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0780 3 7990819 7994935 Vra3g0780 3 7990819 7994935 ECH