Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0779 ATGTCAATAGGTATGCTAAAAAGGTTTCAAGGCTTGCTGCTGAAATGGATGCTTATATTATCTTGCCTGGCATTTATGATTGTGGCTGGTGAAAATGATAAAACAGTGGAGCCTTTGGCCTTTGCTGTTGTTCACGATCTACCTATACCAGCAAGTCTCCATTTGTCAAAGCATGTGCTTTCTCAAGGTGCGCCAATTGAAGCATCGTCACCAGTCAGTCCACCCTCATATGGTCCTTTCTCAACTGCAGGCCCTTCTGCTTCAACTCAGCCACCATTGTCTCCTTATGTATCCAATTGTTGTAAACAAGACATGGTGCTGAAAAGAGCCAGTAAGAGTTGCCACTGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCGAATGTCTCTCAAAGTCCTAGTTGGAATGATTTTCTTAATGAATTAGCTGTCCAGCTTGGGTTGCGAAATACCCAGATTGAACTGATAAACTTTTATGTTCTCAGTGTATCAACATTAAATATATCAATGAATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAGTGAAGTTTCTAAAATAAACTCTTCGCTTTCAATGCATAAGGTTAAACTAGACCCTCGATTAGTGGGTGGATACCAACTTCTCAATATAACTTGGTTTGAACCACCAGCGCCTTCACAAGCTCCTAGGTTAGCTGCATCACCTGTGAAAACCCCTTCGTATCATTCACCTACCGCTGTATCATCATCTGGTTCTTCAGGACGGCATTCAAATCTGTTTATTATTCTTGGAATTATTATTGGCATAATCTTTATTGGTATCATATCTGTCCTTATATTCTGTTTATGTACATTCCTGCCCAAAGCAAACGCTCCTCCTGGGGAAACTGAAAAGCCAAGGATAGAGAGTACAGTTTCAGCTGTGGGTTCTCTTCCTCACCCAAGCAGTACACGCTTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAACTTTGAAACAGCGAGCGTACTTGGAGAAGGAGGGTTTGGAAGAGTTTTTAAAGGTGTCTTGAATGATGGTACTCCTGTTGCAATTAAGAGGCTTACAAGTGGAGGGCAACAGGGTGACAAAGAGTTTTTGGTGGAAGTCGAGATGCTTAGCCGCTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTTCAGTAATCGTGATTCATCACAAAATTTACTTTGCTATGAGCTTGTTCCCAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATTAATTGTCCTTTGGATTGGGACACCAGAATGAAAATTGCGCTTGATGCTGCAAGGGGGCTTTCATACCTGCACGAAGACTCACAGCCATGTGTAATACATAGAGACTTCAAGGCATCCAACATATTGCTAGAGAACAACTTTCACGCCAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCAAATTATTTGTCTACTCGTGTCATGGGGACATTTGGGTACGTAGCTCCTGAGTATGCCATGACTGGACACCTACTTGTTAAAAGTGATGTTTATAGCTATGGCGTTGTCTTACTGGAACTGCTTACCGGTAGGAAGCCTGTGGATATGTCACAGCCAACTGGGCAAGAGAACCTTGTTACTTGGGCTAGGCCAATCCTTAGAGATAAGGATAGGTTGGAAGAGATTGTTGATCCAAGTCTCGGGGGAAAGTATCCTAAAGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCCGAAGCAAACCAGCGACCCACAATGGGTGAAGTGGTGCAGTCACTTAAAATGGTGCAGCGCGTCACAGAATACCATGATTCGCTGTTGGCCTCATCCAATACTCGAGCCAACCTGAGACAGTCCTCTAGCACTTTTGAATTTGATGGAACATCTTCTGTATTCTCTTCGGGTCCATACTCTGGCATAAGTGCCTTTGAAAACGACAACATTTCAAGGACTGTGGTTTTCTCTGAAGATCTTTGTGAAGGACGATAA 2016 0.4286 MSIGMLKRFQGLLLKWMLILSCLAFMIVAGENDKTVEPLAFAVVHDLPIPASLHLSKHVLSQGAPIEASSPVSPPSYGPFSTAGPSASTQPPLSPYVSNCCKQDMVLKRASKSCHCAYPIKLDLFLSNVSQSPSWNDFLNELAVQLGLRNTQIELINFYVLSVSTLNISMNITPHKGISFSASEVSKINSSLSMHKVKLDPRLVGGYQLLNITWFEPPAPSQAPRLAASPVKTPSYHSPTAVSSSGSSGRHSNLFIILGIIIGIIFIGIISVLIFCLCTFLPKANAPPGETEKPRIESTVSAVGSLPHPSSTRFIAYEELKEATNNFETASVLGEGGFGRVFKGVLNDGTPVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYFSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEEIVDPSLGGKYPKEDFVRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRVTEYHDSLLASSNTRANLRQSSSTFEFDGTSSVFSSGPYSGISAFENDNISRTVVFSEDLCEGR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0779 671 MobiDBLite consensus disorder prediction 66 86 - -
Vra3g0779 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 83 671 - -
Vra3g0779 671 PANTHER OS01G0750732 PROTEIN 83 671 - -
Vra3g0779 671 SUPERFAMILY Protein kinase-like (PK-like) 302 604 IPR011009 -
Vra3g0779 671 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Vra3g0779 671 Gene3D Transferase(Phosphotransferase) domain 1 405 624 - -
Vra3g0779 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Vra3g0779 671 ProSiteProfiles Protein kinase domain profile. 327 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0779 671 Pfam Protein kinase domain 328 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0779 671 Gene3D Phosphorylase Kinase; domain 1 308 404 - -
Vra3g0779 671 CDD STKc_IRAK 333 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0779 Vra-Chr3 7982886 7988713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0779 12 671 Receptor kinase-like Gene Family AT4G02010 66.102 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vra3g0779 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0779 - - gmx:100775615 1169.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0779 3 7982886 7988713 Vra3g0779 3 7982886 7988713 ECH
Vra3g0779 3 7982886 7988713 Vra8g1306 8 28954584 28965925 PCT