Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0776 ATGGACACTGATGCTAATGCCTCTTCCCAACCCGACTCAGAACCATTTTCAGAGCTCAAATCATCGGAGACTCAAACATCAAAGAAAAGGAAACTGGTTGAGAAAACAGTCGTGGCGGTGAGGATAGGAGAGAATGTTGGGAAGCTGAAGAATGAAGGGCTACCTTCGGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGGTCTCCATATCCAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCGGCCAAAAAGCAGGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCATCACATATACCTCTACGCATAACCATCCATGCCCCACCACCACAAATTCACCCCAACAACCAAAAGAATACGAATCCGAAACGACCCAAGACCTCTCGGCTACCTCAAAGGAGGAAAATCAAGAACACACAGAAGAAGAGCAAAGGGATGATAAGCCGAGCGATGAAGGTAGAAATGAAGAAAAGTTTCTTTACCTGCAATCTCCAATACGATGCTCCCAAGACATAATAATAGAACAAGAAGACCCTTTCAAGCTGAACACGGAGAAAAACCATGAAAGAATAGATCTCCTATTGGAGGAGGAAGAGCCCCTTTGTTACGGACAAGTGAAGAACATGTCTGGTTCGAAAAGCGAAGAACTTGATTTTTTCGACGAGCTTGAGGAGTTGCCTATGTCTTCATCTTTCTTGCACTTCACGAGGAGCATTTTTTCCGATGAAAGGATTCCCGTTGCCCCTTCTTGA 777 0.4427 MDTDANASSQPDSEPFSELKSSETQTSKKRKLVEKTVVAVRIGENVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPCPTTTNSPQQPKEYESETTQDLSATSKEENQEHTEEEQRDDKPSDEGRNEEKFLYLQSPIRCSQDIIIEQEDPFKLNTEKNHERIDLLLEEEEPLCYGQVKNMSGSKSEELDFFDELEELPMSSSFLHFTRSIFSDERIPVAPS* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0776 258 MobiDBLite consensus disorder prediction 109 139 - -
Vra3g0776 258 MobiDBLite consensus disorder prediction 1 31 - -
Vra3g0776 258 ProSiteProfiles WRKY domain profile. 50 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0776 258 PANTHER WRKY TRANSCRIPTION FACTOR 69-RELATED 20 243 - -
Vra3g0776 258 MobiDBLite consensus disorder prediction 109 163 - -
Vra3g0776 258 MobiDBLite consensus disorder prediction 1 22 - -
Vra3g0776 258 Pfam WRKY DNA -binding domain 57 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0776 258 SUPERFAMILY WRKY DNA-binding domain 53 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0776 258 SMART WRKY_cls 55 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0776 258 Gene3D WRKY domain 42 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0776 258 MobiDBLite consensus disorder prediction 140 163 - -
Vra3g0776 258 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 243 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0776 Vra-Chr3 7968519 7970494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0776 22 240 WRKY Transcription Factor Family AT4G01250 38.565 1.01e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra3g0776 WRKY 4.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0776 - - var:108328057 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0776 3 7968519 7970494 Vra3g0776 3 7968519 7970494 ECH