Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0774 ATGGAAATCGACCAATTTTCATCCACAGCTTTAAATTTAAGAGAAATCCTAGTGGGTTATGGCTCTACACAAGAGGATGTGTTTCAAGAGAAAGAGAGTTTTTCTGGAATGGAATTTCTGGGACCTATTGAGGATGAAAAAGGAACCAAACTGTTCGAGGATGAAGATCAGAAACAGCTACAAGAACCCCAAGTTGATAAGTTGTTAGAAGAGTTTAACTGTGACTATGATATGCAACTGAAACCAACACCACAGTTCGATGAAACTACTTGGCCAGCGAAACATGACATAGAATCAGCTTTGCCACCATCATTAGCATCCTTAGAGCTGCTGAGAAACTACAGAAGCAGATTTAAGAGGACAAGCGAGCAAAATATAGCGAAACCTTCTTTAGATCACCACCAGATATCAACTGAAGAAATTATGAGAGTAGCTGGAGCAAGATATGTTCAATATTCTGCACATTGGAATGATAGTTTTTGCATCCCTATGCACCCATACGGATTGGATTTTGGTGGTTTGTCTGAGGAAGAAAATAGAGACGTAGAACTTGCTCAGTTTCTCCTTGCTGCAGCTGAGAGGGTAGGTTGCCACCAGTTTGAACGTGCAAACAGATTACTTCTCCACTGTCAACTGAATTCATCACCCGATAATGGAAGCCCCGTTCAAAGAGTTATCTTTCACTTCGCCCAAGCGCTTCGAGAGAGAATCGACAGAGGACTGGGAAGAACGACAGCGAAGGGATCAGAGAAAAAAGAAGAAAGGGGGTGGATTCAAAAGATTGACACCAATGTTGCCCTAACATTCCATCAAAATATTCCTTTCAATCAAGTCATGCAATTCACCGGAATACAAACTATAGTGGAACATGTTGCATCTGAGACCAAAATTCATGTTATTGATCTCGAAACAGTATGTGGGGTGCACAATACAGTATTGATGCAAGCACTGACAGAACGGCAGGATTGCAAAGTGCAACTTTTGAAGATAACTGCACTTGCACTTAATTCACGAAGAAGCATAATACAAGAGACTGGAAAAAGGTTAACTAGTTTTGCTGAATCATTGAACTTGCCCTTTTCATATAATGCAGTTTTTGTGAGAGACTTTGGAGAGATAAGGGAAGGTGATTTTGAAATTGGAGAGGGTGAAGCAGTGGCTGTGTACTCTCCATATTTTCTGAGGTGCATGGTATCAAGGCCAGATTGTATGGAAAAGTTGATGAGAGTTATATGGAATATGAAGCCGGTTATAATGATAGTTCTTGAAGTTGAAGCAAACCATAACTCACCCATCTTTGTGAACCGGTTCATTGAAGCTTTGTTCTTCTACTCAGCTTATTTTGATTGCCTTGGAAGCTGCATAAATGATGAAAATGATGAGAGTAGAAGGAAAATAGAAGCAGTGTTATCTGAAGGGATAAGGGAAATTGTTGCAATGGAAGGGAGAGAAAGAAAAGTTAGAAATGTGAAGATAGATGTTTGGAGAAAGTTCTTTGCAAGGTACCGAATGATAGAAACAGGGTTTAGTGAGTCATCTCTTTACCAAGCTCACCTCGTCAACAAACAGTTTGCTTTTGGGAAATTCTGCACTTTAGAAAAGAATGCCAAGTCTCTTATACTTGGATGGAAAGGGACCCCAATTCATTCAATCTCGGCTTGGAGGTTTCTTTGA 1674 0.4014 MEIDQFSSTALNLREILVGYGSTQEDVFQEKESFSGMEFLGPIEDEKGTKLFEDEDQKQLQEPQVDKLLEEFNCDYDMQLKPTPQFDETTWPAKHDIESALPPSLASLELLRNYRSRFKRTSEQNIAKPSLDHHQISTEEIMRVAGARYVQYSAHWNDSFCIPMHPYGLDFGGLSEEENRDVELAQFLLAAAERVGCHQFERANRLLLHCQLNSSPDNGSPVQRVIFHFAQALRERIDRGLGRTTAKGSEKKEERGWIQKIDTNVALTFHQNIPFNQVMQFTGIQTIVEHVASETKIHVIDLETVCGVHNTVLMQALTERQDCKVQLLKITALALNSRRSIIQETGKRLTSFAESLNLPFSYNAVFVRDFGEIREGDFEIGEGEAVAVYSPYFLRCMVSRPDCMEKLMRVIWNMKPVIMIVLEVEANHNSPIFVNRFIEALFFYSAYFDCLGSCINDENDESRRKIEAVLSEGIREIVAMEGRERKVRNVKIDVWRKFFARYRMIETGFSESSLYQAHLVNKQFAFGKFCTLEKNAKSLILGWKGTPIHSISAWRFL* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0774 557 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 53 555 IPR005202 -
Vra3g0774 557 ProSiteProfiles GRAS family profile. 175 555 IPR005202 -
Vra3g0774 557 Pfam GRAS domain family 185 555 IPR005202 -
Vra3g0774 557 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 53 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0774 Vra-Chr3 7960034 7961806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0774 182 556 GRAS Transcription Factor Family AT1G66350 28.723 1.69e-42 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra3g0774 GRAS 4.9e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0774 - - gmx:100791952 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0774 3 7960034 7961806 Vra3g0774 3 7960034 7961806 ECH