Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0773 ATGTGGCGATCAATGTGCCATTCTGGTATTCTTCTTTTTCTTTCTCTGAGATTTCTGTCAAAAGATGTCAGGCTTTCTTCAGCTGAAGGAAAATGCACAATGCATGATGAATCTTTTAAAAGTCCTGCTGAACATGCTTCAAAATTAACAGTTTCTGGTAGTTCTAACCATGGTCAACGAGACGAGAAGGTTGGGGAACAGCATGCTAAGGAGATAACAAGTAACCTGGATTGGAAACCTCTAGAGAGAGATTTATATTTGAAGGGGATAGAAGTGTTTGGAAAAAACAGTTGCCTTATTGCTCGCAATTTACTTTCTGGCTTGAAGACTTGCTCGGAAGTAGCTAGTTACATGTTTGCTGAGGAGGAGTCAATGCTCCATGGATCCATGCCACTTACAAATGCAAATAACGATGATCAGGCTAATGCAGAGAGCACGGACGAAGAGACACCAAGATCACAGTTGCAGCGGAAAAGGGGGAAATATTCTCGTAAATGTGGTGGACTCTCAGCTAGATGGAGGAAAAAGGGTGATGGGCAAAAACGAAGTAATACACAGTATACTCCTTGTAGGTGTCAAGGAATCTGCACAAAGGAATGCACTTGTCATCGTCATGGTACTCGTTGTGAAAAATATTGTGGGTGTTCAAGGTTTTGCAGAAACCGGTTCCGAGGATGTTATTGTGCCAAGAGTCAATGCAGAAGTAAACTATGCCCATGCTTTGCAATCAACCGTGAATGTGATCCAGATATTTGTCGAAATTGTTGGGTTGGTTGCAAGGATGGTTCACCAGGGGAGCTAGCCTGGGGTGGAAATGGTCATTGTGGAAATATGAATCTTCTTTTGGGGAAAAAAGAGAGGATTCTTTTGGCAAAGTCAAATGTTGTAGGATGGGGAGTTTTTGCAAAGAACCCAATTAACAAAGATGCTTGTCTCGGAGAATACACAGGTGAACTAATCACTCACAAAGAAGCAGAAAAACGTGGAAAACTATATAATCGAATAAATCACTCTTTTCTTTTTGACCTCAATGATAAGTGGGTTATTGATGCTCGTCGCTATGGAGACAAGTTAAAATTTGCAAACCACTCATCAAAACCTAATTGTTATGCGAAGGTGATGTTTGTTGGAGGAGATCATAGAGTTGGTATATATGCCAAGGAAAATATCAAAGTCGGCGATGAGATTTTCTATGATTATTTCTACAAAAAAGAATGTGCACCATCATGGGCACGTCCATCTGATGATGAGGCTTCTAATGAAAATGGATCAATTGCTTCACAACATGGCAAAGGTAGATAA 1302 0.4055 MWRSMCHSGILLFLSLRFLSKDVRLSSAEGKCTMHDESFKSPAEHASKLTVSGSSNHGQRDEKVGEQHAKEITSNLDWKPLERDLYLKGIEVFGKNSCLIARNLLSGLKTCSEVASYMFAEEESMLHGSMPLTNANNDDQANAESTDEETPRSQLQRKRGKYSRKCGGLSARWRKKGDGQKRSNTQYTPCRCQGICTKECTCHRHGTRCEKYCGCSRFCRNRFRGCYCAKSQCRSKLCPCFAINRECDPDICRNCWVGCKDGSPGELAWGGNGHCGNMNLLLGKKERILLAKSNVVGWGVFAKNPINKDACLGEYTGELITHKEAEKRGKLYNRINHSFLFDLNDKWVIDARRYGDKLKFANHSSKPNCYAKVMFVGGDHRVGIYAKENIKVGDEIFYDYFYKKECAPSWARPSDDEASNENGSIASQHGKGR* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0773 433 MobiDBLite consensus disorder prediction 36 67 - -
Vra3g0773 433 Pfam CXC domain 225 256 IPR041355 -
Vra3g0773 433 Pfam SET domain 297 400 IPR001214 GO:0005515
Vra3g0773 433 ProSiteProfiles CXC domain profile. 170 272 IPR026489 -
Vra3g0773 433 ProSiteProfiles SET domain profile. 286 401 IPR001214 GO:0005515
Vra3g0773 433 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 52 427 - -
Vra3g0773 433 SMART set_7 286 407 IPR001214 GO:0005515
Vra3g0773 433 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 52 427 IPR045318 GO:0006338|GO:0018024
Vra3g0773 433 MobiDBLite consensus disorder prediction 411 433 - -
Vra3g0773 433 SUPERFAMILY SET domain 183 402 IPR046341 -
Vra3g0773 433 CDD SET_EZH 286 402 - -
Vra3g0773 433 Gene3D SET domain 187 402 IPR046341 -
Vra3g0773 433 SMART CXC_2 221 258 IPR033467 -
Vra3g0773 433 MobiDBLite consensus disorder prediction 129 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0773 Vra-Chr3 7950121 7956008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0773 275 400 C2H2 Transcription Factor Family AT2G23740 29.371 3.36e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra3g0773 SET 3.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0773 - - vra:106756978 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0773 3 7950121 7956008 Vra3g0773 3 7950121 7956008 ECH
Vra3g0773 3 7950121 7956008 Vra8g1301 8 28913200 28925044 PCT