Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0768 ATGGCATCGATTCAACGTTCGGCGACGAGCTCTGGATCTGAGGCAGGAGATCCGCAAATCGACGAGAGAAAGCGGAAGAGAATGCTGTCGAACCGCGAATCCGCGCGGCGATCGCGGATGAGGAAGCAGAAACAGCTGGAGGATTTGACCGATGAGGTTAGCAGATTGCAAGGCGCGAACAAGAAGCTTGTGGAGAACATAAAGGCCAAGGAAGAAGCGTGCGCTGAGACCGAATCAGCGAACAGCATTCTGAGGGCTCAGACCATGGAACTGACCGAACGATTGCGCTTCTTGAACTCTATCCTTGAAATCGCTGAAGAGGTCGGAGGTTTATCCGTTGAAATTCCCGATATTCCAGATCCTCTCCTCAAGCCGTGGCAGATTCCTCATCCGACGCAACCGATTATGGCCACCTCAAATATGTTTCTGCGTTGA 435 0.5218 MASIQRSATSSGSEAGDPQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSRLQGANKKLVENIKAKEEACAETESANSILRAQTMELTERLRFLNSILEIAEEVGGLSVEIPDIPDPLLKPWQIPHPTQPIMATSNMFLR* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0768 144 MobiDBLite consensus disorder prediction 17 51 - -
Vra3g0768 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Vra3g0768 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 142 - -
Vra3g0768 144 MobiDBLite consensus disorder prediction 1 16 - -
Vra3g0768 144 Gene3D - 21 77 - -
Vra3g0768 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 68 IPR004827 GO:0003700|GO:0006355
Vra3g0768 144 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 142 - -
Vra3g0768 144 MobiDBLite consensus disorder prediction 1 51 - -
Vra3g0768 144 Pfam bZIP transcription factor 23 81 IPR004827 GO:0003700|GO:0006355
Vra3g0768 144 SUPERFAMILY Leucine zipper domain 23 71 IPR046347 GO:0003700|GO:0006355
Vra3g0768 144 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Vra3g0768 144 Coils Coil 32 80 - -
Vra3g0768 144 CDD bZIP_plant_GBF1 24 75 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0768 Vra-Chr3 7927174 7928408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0768 1 142 bZIP Transcription Factor Family AT3G62420 52.055 1.70e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra3g0768 bZIP_1 5.2e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0768 K25786 - gmx:778144 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0768 3 7927174 7928408 Vra8g1294 8 28860359 28861556 PCT