Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0764 ATGGCAGAGGTTGTTTTGTTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCATGAAGAGGAGTTTGAAAGCATAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGCAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATTCAGCTCCACCCAAGAAGTCTAAGATAAATGATGAAGCAATGTCTATTAGGGAGGAAGAAGAAGAGTCAAACGAAAGAACAGAGATAACGGTTGAAGGAGTTGCGGTGGAAAGCGATTACTCGGAATGCAGTTCAGGCGGTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACAATTGTCTTGCTAGTAAGACATTTTTTCGCAGTGCTTTCAAATGGAACGCAAGATTACCCATTTACACTACTTACTGTAATTATATTAAAGGCTACCGGAATTATTATACCTATGTACATAGTTATTAAGATTGTTGGAGCCATTCAGAACAGTAGTGAGCACTATCAGGATTCTGACGATGAAGATGAGATACGGCATAATGTAAATTTAAGACATTCATAG 633 0.3981 MAEVVLLVDDLKLLSGIPRCRICHEEEFESIETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYSAPPKKSKINDEAMSIREEEEESNERTEITVEGVAVESDYSECSSGGDRSASCCRSLAIAFTIVLLVRHFFAVLSNGTQDYPFTLLTVIILKATGIIIPMYIVIKIVGAIQNSSEHYQDSDDEDEIRHNVNLRHS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0764 210 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Vra3g0764 210 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 201 - -
Vra3g0764 210 Pfam Protein of unknown function (DUF3675) 73 181 IPR022143 -
Vra3g0764 210 SUPERFAMILY RING/U-box 18 72 - -
Vra3g0764 210 CDD RING_CH-C4HC3_MARCH 20 67 - -
Vra3g0764 210 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Vra3g0764 210 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 201 IPR033275 -
Vra3g0764 210 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Vra3g0764 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Vra3g0764 210 SMART ringv_2 19 68 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0764 Vra-Chr3 7892910 7895096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0764 20 108 C3H Transcription Factor Family AT2G37950 33.333 3.84e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0764 - - gmx:100802379 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0764 3 7892910 7895096 Vra3g0764 3 7892910 7895096 ECH
Vra3g0764 3 7892910 7895096 Vra8g1290 8 28805505 28807674 PCT