Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0753 ATGGGAAGGACTCCTTGTTGTGAGAAGGTGGGAATGAAGAAGGGGAGGTGGACAGCGGAGGAGGATGAGATTTTGACCAAGTACATTCAGGCCAATGGAGAAGGTTCTTGGAGGAGGTTGCCAAAAAATGCAGGATTGTTAAGATGTGGGAAGAGTTGCAGGTTAAGGTGGGTTAACTATTTGAGAGCTGATCTAAAGAGAGGAGACATTTCTGTCGAGGAAGAAAATACCATTGTCAAGTTGCATGCTTCTTTAGGCAACAGGTGGTCCTTGATAGCAAGTCACTTGCCAGGAAGAACGGACAACGAGATTAAAAATTACTGGAACACTCACTTAAGCAGAACAATTTACACTTTCCGAAGCAGAACTACTAACAAACCAGACATCATCACTCTCACTCTACCTCCCAAGAGGAAACGTGGCAGGACAAGTCGCTGGGCTATGAAGAAGAACAAGACATATTGTGCTCAAAAACAAAAGCAACCGCTCTTACCAGCAGTTCCTCTTCCACCAACACCGCCACTTGAGACCGAGAAACATTCATCCACCCATGAGAATACTACTACTCAAGAAGAAGAAAACCTAGGCACTAATGCCGTATGGGTTGAGGGTGAGAAAGAAATAATGAACAAGGAGGATGACATATGGGGACCCTATGACAAGGAAGTTATTAATGGGGGAGAGTGGGATCAGGTGTTGAGTTTTGAATCTTTCAACGACATCATGAACAGTTACTGCCCCCAAGCAAGTGGGTGTTGGACCATTTCTGATGAAGGTTACAGAGAGAGCAGTGAAGTGGTTGGGAATAAAACTTGTGACCACACCGTAACGTCGAGTGGTCGGGAGAAGCGGTGTTTTTTTTCAGCAAAGGCTTCTTCTGATTCTGACTTATGCCAAAGCGCGGTGCAGCTGGATCATAAGGATGAGTCTGTGTCGTGGGAGCAGCATCAGAGCCTTCTCTCTTGGCTTTGCGAAGATGAAGACTGGGAGAAGGATTTGCAGAGCGTTTGTGAGATTGATCCTCAGAAACAAAAGGACATGGTTGATTGGTTTCTCTCTTGA 1062 0.4548 MGRTPCCEKVGMKKGRWTAEEDEILTKYIQANGEGSWRRLPKNAGLLRCGKSCRLRWVNYLRADLKRGDISVEEENTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNTHLSRTIYTFRSRTTNKPDIITLTLPPKRKRGRTSRWAMKKNKTYCAQKQKQPLLPAVPLPPTPPLETEKHSSTHENTTTQEEENLGTNAVWVEGEKEIMNKEDDIWGPYDKEVINGGEWDQVLSFESFNDIMNSYCPQASGCWTISDEGYRESSEVVGNKTCDHTVTSSGREKRCFFSAKASSDSDLCQSAVQLDHKDESVSWEQHQSLLSWLCEDEDWEKDLQSVCEIDPQKQKDMVDWFLS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0753 353 Gene3D - 71 115 - -
Vra3g0753 353 CDD SANT 16 61 IPR001005 -
Vra3g0753 353 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vra3g0753 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra3g0753 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra3g0753 353 PANTHER MYB TRANSCRIPTION FACTOR 2 338 - -
Vra3g0753 353 SMART sant 66 114 IPR001005 -
Vra3g0753 353 SMART sant 13 63 IPR001005 -
Vra3g0753 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra3g0753 353 Gene3D - 13 66 - -
Vra3g0753 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra3g0753 353 MobiDBLite consensus disorder prediction 157 192 - -
Vra3g0753 353 CDD SANT 71 112 IPR001005 -
Vra3g0753 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra3g0753 353 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 338 - -
Vra3g0753 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0753 Vra-Chr3 7789224 7792722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0753 1 339 MYB Transcription Factor Family AT5G49330 40.909 2.67e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g0753 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0753 K09422 - gmx:100788260 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0753 3 7789224 7792722 Vra3g0753 3 7789224 7792722 ECH
Vra3g0753 3 7789224 7792722 Vra8g1276 8 28662649 28668030 PCT