Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0750 ATGTCTGATAATCATAAGACTCAGAGTTCGGCACCAAAACTGTTTGGTTTCCCACTAACAGAGCAAGAGGAATTTGCAGAAAGGAAATACGATGTAGGAGAGGACAGAAAATTCAGGTGTCACTACTGCAACAGAGTTTTCGCAAACTCGCAGGCCTTAGGGGGCCACCAAAACGCTCACAAGAAAGAACGTCAGAGAGCCAGGCGATTCCAAATCCACAACCACAGACGCTCCTCTATGCCATCATCATCGTCATCTCTTTCTGTTACCCCTCTTACCTTTCTCACCTCCCATGCAATAATACGTTCGCTACCACTTTCAGTTACACTGCCTCCCATTTACCTTTCATCTCCTTCTCCTTCTACTTCCACCTCTGCAACGCACTTCCCCTCACGCCCCGTTTTCGTTCCTTCCTCCACCCACCTCACTGCTAATGCTACTGTTACTACTTCATGTTTTCCTCTTCAGCTCTATGCCTCACCTTCTGTGCTGCAATCTGCTTCTACTGTCCTTGATTTTGCAGCAGACAGGGAAGTTGATGTCCATCTCAAATTGTAG 558 0.4695 MSDNHKTQSSAPKLFGFPLTEQEEFAERKYDVGEDRKFRCHYCNRVFANSQALGGHQNAHKKERQRARRFQIHNHRRSSMPSSSSSLSVTPLTFLTSHAIIRSLPLSVTLPPIYLSSPSPSTSTSATHFPSRPVFVPSSTHLTANATVTTSCFPLQLYASPSVLQSASTVLDFAADREVDVHLKL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0750 185 PANTHER ZINC FINGER PROTEIN 6-LIKE 3 185 - -
Vra3g0750 185 SUPERFAMILY beta-beta-alpha zinc fingers 35 65 IPR036236 -
Vra3g0750 185 Gene3D Classic Zinc Finger 21 90 - -
Vra3g0750 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Vra3g0750 185 PANTHER ZINC FINGER PROTEIN 5 3 185 IPR044299 GO:0010090
Vra3g0750 185 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Vra3g0750 185 Pfam C2H2-type zinc finger 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0750 Vra-Chr3 7775402 7777590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0750 7 72 C2H2 Transcription Factor Family AT1G67030 53.425 1.37e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0750 zf-C2H2_6 9.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0750 - - gmx:100806818 204.527