Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0744 ATGGCGACGAGAAATCGAACGGTGGAGTTTAGGAAGCACAGAGACGCCGTGAAGAGCGTGCGTGCTCCTCTCTCTTCCTCCGCTGCATCTGCTTCTTCCACCGGTCCCGTCGTTGAAATGGTTTCGCTTCTTCCTTCCAATCGATCATCCTATGCTCCTTTAAGCACCGAGGACCCATCCACCTCTAGGGATGCGGTTACTGTGGGGTTGCCGCCGTCTTGGGTGGATGATTCTGAAGAAATAGCTGCGGCTATACAACGTGCTCGGGTTAAAATTTCTGAGTTAACTAAAGCTCATTCGAAGGCTTTGTTGCCTTCCTTTGGGGATGGCAAAGAGGATCAGCGTCTTATTGAGACTCTCACCCAGGAAATTACATCTCTTCTTAGAAAGTCGGAAGTGAGGCTGAAAAGACTTTCTGCTGCTAGTGGATCTTCTGAGGATTCTAGTGTTAGAAAAAATGTACAGCGTTCCCTTGCTATAGACCTTCAGAACCTATCAATGGATCTTCGGCGAAAGCAGTCAGCATACTTGAAACGTCTGCAACAGCAAAAAGAGGGTTTTGACGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATCACGTGATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAGATGACAAAGCTAAAGAAAAGTGAGCAGTTCTCAGTGGAAAGGGAGAGAGAGATTGAACAAGTTGTTAAATCAGTCCATGAACTTGCTCAAATCATGAAGGATCTCTCTGTCCTAGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTATAACATTCAGAGTGTTTCTACGTCCGTTGAAGAGGGCCTCAAGCAGTTGCAAAAGGCAGAGAGAACACAGAAAAAAGGAGGGATGATTATGTGTGCAACATCACTTGTTATAATGTGCTTTATCATGCTAGTTCTCTTGATACTCAAAGAGATCCTCTTCTAG 966 0.4503 MATRNRTVEFRKHRDAVKSVRAPLSSSAASASSTGPVVEMVSLLPSNRSSYAPLSTEDPSTSRDAVTVGLPPSWVDDSEEIAAAIQRARVKISELTKAHSKALLPSFGDGKEDQRLIETLTQEITSLLRKSEVRLKRLSAASGSSEDSSVRKNVQRSLAIDLQNLSMDLRRKQSAYLKRLQQQKEGFDGVDLEMNFNGSKFGSRDDEFSDVGFSEEQMTKLKKSEQFSVEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERTQKKGGMIMCATSLVIMCFIMLVLLILKEILF* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0744 321 CDD SNARE_syntaxin16 230 286 - -
Vra3g0744 321 MobiDBLite consensus disorder prediction 1 19 - -
Vra3g0744 321 MobiDBLite consensus disorder prediction 1 35 - -
Vra3g0744 321 PANTHER SYNTAXIN 1 316 IPR045242 -
Vra3g0744 321 SMART SynN_4 65 181 IPR006011 GO:0016020
Vra3g0744 321 SMART tSNARE_6 220 287 IPR000727 -
Vra3g0744 321 ProSitePatterns Syntaxin / epimorphin family signature. 231 270 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra3g0744 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Vra3g0744 321 Gene3D - 71 279 - -
Vra3g0744 321 SUPERFAMILY t-snare proteins 70 280 IPR010989 GO:0016020|GO:0016192
Vra3g0744 321 Pfam SNARE domain 261 313 IPR000727 -
Vra3g0744 321 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0744 Vra-Chr3 7729930 7734518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0744 1 310 SNARE and Associated Proteins AT3G05710 68.210 2.12e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0744 K08489 - gmx:100803629 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0744 3 7729930 7734518 Vra8g1465 8 31557904 31563407 ECH
Vra3g0744 3 7729930 7734518 Vra3g0744 3 7729930 7734518 ECH