Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0741 ATGTCGCCGCCAATGTCTGCCGACGCCCACGCCGCTAATCATATCAATCCCAAGGGCCTCCTCTGCAATGCCGCCGCCGGTGCTTCGGCCGGGGTTATTGCTGCTACATTTGTGTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCATGGTGTCCCGCAAATCACCAATGGAAGTGTTAGAGGCAGCATAATAGTTGCTAGCTTGGAGCAAATTTTTCGGAAGGAAGGGTTACGTGGAATGTATCGAGGGCTTGCGCCCACTGTGCTGGCTTTACTTCCAAATTGGGCGGTTTATTTTAGTACATATGAGCATCTTAAGAGCCTTCTCCATGCTGATGATGAAAGCCATCATCTTTCAATTGGGTCTAATATGATAGCTGCTTCTGGTGCTGGAGCTGCAACTACAATGTTCACAAATCCCCTCTGGGTTGTCAAGACTAGACTCCAAACCCAAGGAATGAGATCTGGTGTTGTGCCATATAGGGGCACACTATCCGCATTAAGGAGAATTGCACATGAGGAGGGCATTCGGGGCCTGTACAGTGGACTTGTACCTGCTCTGGCTGGTATCAGTCATGTTGCCATTCAATTTCCTACATACGAGACGATAAAATTTTATCTCGCAAATCAAGATGACGCAGCAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCATCATCCGTTTCCAAAATTTTTGCATCAACGTTAACTTATCCTCATGAGGTCGTACGTTCCAGACTTCAAGAACAAGGGCATCATTCAGAGAAACGGTACTCTGGTGTGATTGACTGTATTAGAAAGGTTTTTCAACAAGAAGGTCTATCGGGTTTTTACCGAGGTTGTGCCACGAACCTTCTGAGGACAACGCCAGCTGCTGTAATCACATTCACCAGCTTTGAAATGATACACCGATTTCTTGTTTCTCTTTTTCCCTCTGATCCACAACCTCATATTTTGTGA 969 0.4582 MSPPMSADAHAANHINPKGLLCNAAAGASAGVIAATFVCPLDVIKTRFQVHGVPQITNGSVRGSIIVASLEQIFRKEGLRGMYRGLAPTVLALLPNWAVYFSTYEHLKSLLHADDESHHLSIGSNMIAASGAGAATTMFTNPLWVVKTRLQTQGMRSGVVPYRGTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYETIKFYLANQDDAAMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCIRKVFQQEGLSGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPSDPQPHIL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0741 322 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 5 321 - -
Vra3g0741 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 208 IPR018108 -
Vra3g0741 322 Gene3D Mitochondrial carrier domain 6 116 IPR023395 -
Vra3g0741 322 Gene3D Mitochondrial carrier domain 117 311 IPR023395 -
Vra3g0741 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 308 IPR018108 -
Vra3g0741 322 Pfam Mitochondrial carrier protein 226 310 IPR018108 -
Vra3g0741 322 Pfam Mitochondrial carrier protein 19 112 IPR018108 -
Vra3g0741 322 Pfam Mitochondrial carrier protein 120 211 IPR018108 -
Vra3g0741 322 SUPERFAMILY Mitochondrial carrier 19 304 IPR023395 -
Vra3g0741 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 18 110 IPR018108 -
Vra3g0741 322 PRINTS Mitochondrial carrier protein signature 23 36 IPR002067 GO:0055085
Vra3g0741 322 PRINTS Mitochondrial carrier protein signature 36 50 IPR002067 GO:0055085
Vra3g0741 322 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Vra3g0741 322 PRINTS Mitochondrial carrier protein signature 135 153 IPR002067 GO:0055085
Vra3g0741 322 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Vra3g0741 322 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 5 321 IPR044712 GO:0006862|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0741 Vra-Chr3 7713198 7717594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0741 5 316 Chloroplast and Mitochondria Gene Families AT2G47490 74.359 2.70e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0741 K15115 - gmx:100500213 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0741 3 7713198 7717594 Vra3g0741 3 7713198 7717594 ECH