Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0740 ATGGCGGCAGAGGCGGCGTTGTTCTTTTCTGTGGCATCAGTGGTGGAGGACGTGCTTCAGCAGCACGGTCCTCGCCTCAAAGATCTTGATTTGGAATCCAGGAAAGCAGAAGAAGCTGCATCAAGAAGATATGAGGCAGCGGGGTGGTTGAGAAAAATGGTTGGAGTAGTTGCGGCTAAAGATTTACCAGCAGAGCCCTCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATTATTCTCTGTAATGTTATTAATAAAGTTCAATCCGGCGCTGTTCCCAAGGTTGTGGAGAGTCCTGTTGATTCTGCATCGATCCCTGATGGGGCACCATTAACGGCATATCAGTATTTTGAAAACGTGAGGAATTTCCTTGTGGCTGTCCAAGAAATTGGACTTCCTACCTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCATCCAGGATTGTCAATTGCGTGTTGGCCCTTAAGTCCTATTGTGAATGGAAAACGAGCGGGGCAAATGGCGTGTGGAAATTTGGTGGAAATCTCAAACCCACTGTGTCTGCCAAATCTTTTGTTAGAAAAAACTCGGACCCATTTACTAATTCCTTGTCAAGGACTTCATCGATCAATGATAAACATCTCACAGTTCTTAGTTCTGACGTAGAGTCTGATAAAATGTCCGGTTCCCATTCTTTGAGTTCGCTTGTTCGTGCGATTCTATTGGATAAGAAGCCAGAAGAAGTTCCAATGTTGGTTGAGTCTGTTTTGTGCAAGGTTGTAGAGGAGTTTGAACAACGAATAGCAAGCCAAGGTGAAAAGGCAAAAGTAACTTCGATTGATCCTGTTTCTCAAAGCAATGGGTCTGTTGTGGCAGATAAAAAGGGGGAGAAGAAGATTCATGTGGTAACGAAAAAAGAAGATGGCATTCATAAAAGTCAAGTTAATGCTATGGTATCAAGAAAAGAGGATCGCATTCATAAAAATCTAGTTGCTGATGAGGAATCGCAAAGGAAATTTCTGAAGCAGAAAATGCTCTTTGATCAGCAGCAAAGAGAAATTCAAGAGCTAAGACATACCCTTCACACAACAAAATCTGGTATGCAGTTCATGCAAATGAAATTTCGTGAGGAGTTCTCCAATCTTGGAATGCACGTTCATGGCTTAGCTCACGCTGCTTCTGGATATCACAGAGTTCTTGAAGAAAATCGCAAGCTATACAATCAAGTCCAGGATCTTAAGGGGAGTATTAGGGTATACTGTCGAGTAAGACCATTCTTTCCTGGACAACCAAACCATTTGAGCGCAGTGGAAAATATTGATGATGGAACTATCACAGTTAATATTCCTTCAAAAAATGGGAAGGGACGAAGGTCCTTCAACTTCAACAAAATCTTTGGACCATCTGCAACCCAAGCTGAAGTCTTCTTAGACATGCAGCCACTCGTTAGATCTGTTCTTGATGGCTATAATGTTTGCATATTTGCATATGGCCAAACAGGATCAGGAAAAACTTACACTATGACTGGACCAAAAGAAATCACAGAGAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGCGATTTGTTTCTTATAGCGGATCAAAGAAAGGACACTTTCCAATATGACGTTTCTGTTCAAATGATTGAGATTTACAATGAACAAGTAAGGGATCTCTTGGTCACTGATGGAACAAACAAAAGATTGGAGATTCGAAGTAGTTCTCAAAAAGGACTCAGCGTTCCAGATGCCAGCCTTGTCCCTGTATCATCAACTATTGATGTTATTGAACTAATGAACCTTGGTCAAAGGAACCGTGCAGTTGGAGCAACAGCTCTTAATGACCGCAGTAGCCGATCTCATAGTTGCTTGACTGTTCATGTTCAAGGAAGAGATTTGACATCTGGAGCTATCCTTCGTGGATGCATGCATTTGGTTGACTTGGCAGGAAGTGAGAGGGTGGATAAATCTGAGGCCACCGGAGATAGACTGAAAGAGGCACAGCATATTAACAAATCTCTTTCAGCTCTGGGAGATGTCATTGCTTCCCTTGCTCAGAAAAACTCGCATGTACCTTACAGAAACAGTAAACTCACACAACTACTCCAAGATTCACTTGGAGGACAGGCAAAGACACTAATGTTTGTTCACATAAGTCCAGAGAGTGATGCTATTGGAGAAACAATTAGTACCTTAAAATTTGCTGAAAGAGTTGCCACAGTTGAACTCGGTGCTGCTAGAGTAAACAAAGATAGTTCAGATGTCAAAGAGCTCAAAGAACAGATTGCCAGCCTTAAGGCAGCACTGGCAAGAAAGGAAGGAGAATCAGAACATTCTTTATGCAGCAGCTCCGAAAAATACAGGACAAAGGGTATTGAGCTTTCACCTTACCAAATTCCTGACACAGGGGATCAGCTTGGATGCCGGCTACCAATGGTGGAGGTTGGCAATATAGAGCTTCAAAGTAATACCACAGTGAGGCACAAAACTCAGAGCTTTGATTTTGATGAGATATCAGGAAATTCGCCACCATGGCCCCCGGTGAACAATAGTCTCGGACAAAACTATGTGGAGGATGACAAAGAATCTGGTTCTGGAGAATGGGTTGACAAGGTGATGGTCAACAACAAGCAAGACGTAAACAAAACCGAGAACCTCTTGGGGTGTTGGCAAACAAGCAATGGAAACTTATCTGAAGCCTTTTATCAGAAATATCTGAAAGATTCTCCCGAAATGTACTCAGAACAATCCTACAACATGTTCATAGGAGGCAACCAGTTTAACATTGCGGGTTCAGATGACACGGATGAGCCCGATGCTGCCACCAGTGATTCCTCAGAACCTGACTTGCTTTGGCAATTTAATCATTCCAAACTTAGTAGCATGACCAGTGGAATTGGATCAAAGACAACAAGATCCATCTCTAAGTCAGCGAAAAGCCCCGAGTTGAGCAAGAATGCTGTTCATTCTTCTCCTTTGGGTCCTTCGCCTTCATTGAAACAGTCAAATGGCGTCTCACATCGAACAGGAAGGCATCCAGCTCCAGTTGACGTGAAACGTAGAAGTGGCGGTAGAAAATAA 3066 0.4286 MAAEAALFFSVASVVEDVLQQHGPRLKDLDLESRKAEEAASRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVINKVQSGAVPKVVESPVDSASIPDGAPLTAYQYFENVRNFLVAVQEIGLPTFEASDLEQGGKSSRIVNCVLALKSYCEWKTSGANGVWKFGGNLKPTVSAKSFVRKNSDPFTNSLSRTSSINDKHLTVLSSDVESDKMSGSHSLSSLVRAILLDKKPEEVPMLVESVLCKVVEEFEQRIASQGEKAKVTSIDPVSQSNGSVVADKKGEKKIHVVTKKEDGIHKSQVNAMVSRKEDRIHKNLVADEESQRKFLKQKMLFDQQQREIQELRHTLHTTKSGMQFMQMKFREEFSNLGMHVHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFFPGQPNHLSAVENIDDGTITVNIPSKNGKGRRSFNFNKIFGPSATQAEVFLDMQPLVRSVLDGYNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFLIADQRKDTFQYDVSVQMIEIYNEQVRDLLVTDGTNKRLEIRSSSQKGLSVPDASLVPVSSTIDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPESDAIGETISTLKFAERVATVELGAARVNKDSSDVKELKEQIASLKAALARKEGESEHSLCSSSEKYRTKGIELSPYQIPDTGDQLGCRLPMVEVGNIELQSNTTVRHKTQSFDFDEISGNSPPWPPVNNSLGQNYVEDDKESGSGEWVDKVMVNNKQDVNKTENLLGCWQTSNGNLSEAFYQKYLKDSPEMYSEQSYNMFIGGNQFNIAGSDDTDEPDAATSDSSEPDLLWQFNHSKLSSMTSGIGSKTTRSISKSAKSPELSKNAVHSSPLGPSPSLKQSNGVSHRTGRHPAPVDVKRRSGGRK* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0740 1021 MobiDBLite consensus disorder prediction 1007 1021 - -
Vra3g0740 1021 MobiDBLite consensus disorder prediction 956 1003 - -
Vra3g0740 1021 SUPERFAMILY Calponin-homology domain, CH-domain 38 173 IPR036872 -
Vra3g0740 1021 Gene3D Kinesin motor domain 406 777 IPR036961 -
Vra3g0740 1021 PRINTS Kinesin heavy chain signature 484 505 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0740 1021 PRINTS Kinesin heavy chain signature 606 623 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0740 1021 PRINTS Kinesin heavy chain signature 637 655 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0740 1021 PRINTS Kinesin heavy chain signature 686 707 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0740 1021 Coils Coil 743 770 - -
Vra3g0740 1021 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Vra3g0740 1021 Pfam Calponin homology (CH) domain 41 162 IPR001715 GO:0005515
Vra3g0740 1021 Pfam Kinesin motor domain 417 735 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0740 1021 CDD KISc_C_terminal 409 738 - -
Vra3g0740 1021 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 1018 - -
Vra3g0740 1021 SMART ch_5 42 160 IPR001715 GO:0005515
Vra3g0740 1021 Gene3D - 27 184 IPR036872 -
Vra3g0740 1021 ProSiteProfiles Kinesin motor domain profile. 411 736 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0740 1021 SMART kinesin_4 409 744 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0740 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 769 IPR027417 -
Vra3g0740 1021 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 2 1018 - -
Vra3g0740 1021 MobiDBLite consensus disorder prediction 956 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0740 Vra-Chr3 7698025 7704016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0740 399 772 Calmodulin-binding Proteins AT5G65930 41.379 8.13e-78 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0740 3 7698025 7704016 Vra3g0740 3 7698025 7704016 ECH
Vra3g0740 3 7698025 7704016 Vra8g1261 8 28394139 28400208 PCT