Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0736 ATGGTTTCGCTGAAACTGCAGAAGCGCCTCGCCGCAAGCGTTCTCAAGTGCGGCAGAGGAAAGGTTTGGCTTGACCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGAAAGTTGGTTAAGGATGGGTTTATTATCAGGAAACCCACCAAGATTCACTCTCGCTCACGCGCCCGTCGGATGAAGGAGGCCAAGAGAAAAGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACTAAAATCCTTTGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAATCCAAGAAGATTGACAAGCACATGTACCATGACATGTATATGAAAGTCAAGGGTAATGTGTTCAAGAACAAGAGGGTGTTGATGGAGAGCATCCATAAATCCAAAGCTGAGAAGGCAAGAGAGAAGACCTTGTCTGATCAGTTTGAGGCCAAACGTGCCAAGAACAAAGCCAGCAGGGAAAGGAAAATTGCCCGGAGGGAGGAGCGATTGGCCCAAGGTCCAGGAGAAAAGGCTGCGCCCAGTGCTCCTGCCGCTACAGCATCACAGCCTGCCCAAGCACAAAAGAAATCCAAGAAGTGA 633 0.4976 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKAAPSAPAATASQPAQAQKKSKK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0736 210 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vra3g0736 210 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Vra3g0736 210 PANTHER 60S RIBOSOMAL PROTEIN L19 1 210 IPR039547 GO:0003723|GO:0003735|GO:0022625
Vra3g0736 210 MobiDBLite consensus disorder prediction 149 210 - -
Vra3g0736 210 PANTHER RIBOSOMAL PROTEIN L19 1 210 - -
Vra3g0736 210 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vra3g0736 210 Gene3D - 57 190 - -
Vra3g0736 210 MobiDBLite consensus disorder prediction 57 79 - -
Vra3g0736 210 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Vra3g0736 210 MobiDBLite consensus disorder prediction 149 184 - -
Vra3g0736 210 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Vra3g0736 210 MobiDBLite consensus disorder prediction 196 210 - -
Vra3g0736 210 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vra3g0736 210 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vra3g0736 210 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0736 Vra-Chr3 7674767 7676818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0736 1 210 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.238 1.06e-128 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0736 K02885 - gmx:100527501 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0736 3 7674767 7676818 Vra3g0736 3 7674767 7676818 ECH