Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0731 ATGCTAGAGATCCATTGCTATCACTTTTCTTTCTTCTTCTTCTTCTTTATCAGTAGAAAAATGCTACCTCACATACCCTGCATTCTCTCTGCGCTTCATGTTATACTCCTTTTTTCAGCAACCCAATTCAGCATCACCGCAGAAGCAACGAGAGCCCTGGAACAAACCCAGCTCCATTTCCATGTAGCAAACTCCACATGCGAGGGAACACTCTACCCGGACCTCTGCGTCTCAACCCTTACCTCTTTCCCAGATCTCACCTCAAAAAACCTACCACAAATGATATGTTCTGTCGTCAACCACACCATATACGAGGTCACATTGTCCTCCTCCAACTGCAGCAGTCTCCGAAAGAAGCTCCCGAGTCTCAACAAACTCGAACAGCGAGCTCTTGACGACTGCCTCGACCTCTTCGACGAAACCGTGGAGGAGCTCAAAACCACCGTGGCGGATCTCTGCCAAAGCACAATAGGGCCGAAGCGTTACCACGACTCTCAGACTCTCTTAAGCGGCGCCATGACCAACCTGTACACGTGTCTGGATGGCTTTGCGTACAGCAAAGGGCACGTGAGGGAGAAGATTGAAGAGGGGCTGATGGAGATTTCGCATCTCGTAAGCAACTCGTTGGCCATGCTGAAGAAAGTGCCCGAAAAGAAGAAACAGTTAAAGAACGAGATTTTTCCCGAATATGGAAAGATGAAAGACGGGTTCCCGTCCTGGGTTACCCCTAAAGACCGGAAGTTGCTTCAAGCTCAGGTGAATGAAACGAAGTTCGACCTTGTTGTGGCCAAAGATGGCAGTGGCAACTTCACCACTATAGGTGAAGCAGTGGCGGCAGCTCCAAACTCCAGCGCGACCAGATTTGTGATACACATAAAAGCTGGGGCATACTTCGAGAACGTGGAGGTAATAAGAAGGAAGACGAATCTGATGTGGGTCGGAGATGGAATTGGAAAGACTGTTGTGAAGGCAAGCAGGAACGTCGTTGATGGCTGGACTACTTTCCAATCTGCCACTGTCGCTGTGGTTGGAGACGGATTCATAGCAAAAGGTGTAACCTTTGAGAACTCAGCTGGGCCCAGCAAACACCAAGCTGTGGCTCTAAGAAACGGTGCTGATTTCTCAGCTTTCTACCAGTGCAGCTTTGTTGCCTACCAAGACACGCTCTATGTCCATTCTCTGCGTCAATTCTACCGCGAATGCGACGTTTATGGAACCGTGGACTTCATCTTTGGTAATGCAGCGGCGGTGCTCCAGAACTGCAACTTGTACGCAAGAAAGCCTAATAAAAACCAGAGGAACCTGTTCACTGCACAAGGTAGAGAAGACCCTAATCAAAGCACCGGCATTTCCATCATAAACTGCAAGGTTGCAGCAGCTGCTGATTTGATCCCTGTGAAATCTGAGTTCAGGAATTACTTGGGTCGTCCCTGGAAGATGTATTCGAGGACTGTTTTTCTGAATTCTTTGATGGAGGATCTGATAGAGCCTGCAGGATGGTTGGAATGGAATGGAACGTTTGCATTGGATACTTTGTATTATGGAGAGTACAACAATAGAGGTCCTGGTGCAAATACAAGTGGCAGAGTTACGTGGCCTGGTTATAGGGTCATCACCAACTCCACTGAGGCAAGCCAGTTCACGGTTCAAAATTTCATTCAAGGCAACGAATGGTTGAACTCTTATGGCATTCCATTCTTCTCTGACTTGACTTGA 1716 0.4802 MLEIHCYHFSFFFFFFISRKMLPHIPCILSALHVILLFSATQFSITAEATRALEQTQLHFHVANSTCEGTLYPDLCVSTLTSFPDLTSKNLPQMICSVVNHTIYEVTLSSSNCSSLRKKLPSLNKLEQRALDDCLDLFDETVEELKTTVADLCQSTIGPKRYHDSQTLLSGAMTNLYTCLDGFAYSKGHVREKIEEGLMEISHLVSNSLAMLKKVPEKKKQLKNEIFPEYGKMKDGFPSWVTPKDRKLLQAQVNETKFDLVVAKDGSGNFTTIGEAVAAAPNSSATRFVIHIKAGAYFENVEVIRRKTNLMWVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGVTFENSAGPSKHQAVALRNGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAAVLQNCNLYARKPNKNQRNLFTAQGREDPNQSTGISIINCKVAAAADLIPVKSEFRNYLGRPWKMYSRTVFLNSLMEDLIEPAGWLEWNGTFALDTLYYGEYNNRGPGANTSGRVTWPGYRVITNSTEASQFTVQNFIQGNEWLNSYGIPFFSDLT* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0731 571 PANTHER PECTINESTERASE 37 568 - -
Vra3g0731 571 PANTHER PECTINESTERASE 37 568 - -
Vra3g0731 571 SMART PMEI_2 58 211 IPR006501 GO:0004857
Vra3g0731 571 Pfam Plant invertase/pectin methylesterase inhibitor 64 211 IPR006501 GO:0004857
Vra3g0731 571 Pfam Pectinesterase 259 556 IPR000070 GO:0030599|GO:0042545
Vra3g0731 571 CDD PMEI-like_3 65 216 - -
Vra3g0731 571 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Vra3g0731 571 Gene3D - 253 570 IPR012334 -
Vra3g0731 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 216 IPR035513 -
Vra3g0731 571 SUPERFAMILY Pectin lyase-like 257 568 IPR011050 -
Vra3g0731 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 33 214 IPR006501 GO:0004857
Vra3g0731 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 215 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0731 Vra-Chr3 7620920 7624483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0731 87 570 Carbohydrate Esterase AT4G02320 54.910 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0731 K01051 - gmx:100813592 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0731 3 7620920 7624483 Vra3g0731 3 7620920 7624483 ECH
Vra8g1251 8 28233901 28237905 Vra3g0731 3 7620920 7624483 PCT