Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0730 ATGGCTTTTAAGAACTTGTCCCTTCTTACTCTCTGTGTTTCTCTTGTGTTATCCTCCTTGTCACCGATTTCCATAGCTTCTAATAATAAACGTGATGTTGTTCCACCAGAAACCTTGTGCAGATCTACCCTATATCCTTCCTACTGCAAAACCCTGCTTGCTAATCAAAACGGCACAATCTTTGACTATGGTCGAATTTCTGTCCGAAAGTCCTTGTCCCAGTCCCGCAAATTCTTAAACCTCGTAAACTCATTCCTCCAAGACAGATCCTCTTTGTTGTCTCTTCCCACAACTCGCGCCCTTGAAGACTGTCAGTTCCTCGCTGAACAAAACTTCGAATACTTATCAAACGCACTCGACAATGTTGATAAAGTCAGCGATGATCTTCCCACCACTGAAGGTGAAGACCAGCAAACCATGCTTAGTGCTGCTTTGACAAACCAAGAAACTTGTTTAGAAGGTTTACAGACCACAGCTTCCGATGAAAGAGTGAAGAGTGAACTTCTCTCATCACTCTCTGATGACACGAAGCTTCACAGTGTTTCCCTTGATTTGTTCATCAAGGGTTGGGTGCCTGAGAAGAAAATCTCAACATCATGGCAACCCAATGGAAGACACTTGGGTTTCCGCAACGGTCGTTTACCATTGAGGATGTCTAACCGTGTACGTGCCATCTATGATTCTGCTCGAGGTCACGGAAGAAAACTGCTTCAAGATAGCAGCAACAGTGTACTGGTCAATGATATTGTGGTTGTTAGTCAGGACGGAAGCGGGAACTTCACTACCATCAACGATGCTATAGCAGCTGCGCCAAATAACTCTGCTGCTAGTGATGGTTACTTTTTAATTTTTGTCACTGGAGGTGTGTACCAAGAGTATGTATCCATAGCCAAAAACAAAAAGTACTTGATGATGGTTGGAGATGGGATCAATCAAACGATTATCACCGGTGATCACAACGTTGTCGATAACTTCACAACATTCAACTCAGCAACATTTGCTGTGGTAGCACAAGGGTTTGTAGCTGTTAACATAACATTCCGAAACACTGCTGGGCCAAGCAAGCACCAAGCGGTTGCAGTGAGAAACGGAGCTGATTTGTCAACTTTTTACAGCTGCAGCTTTGAGGGGTATCAAGACACCTTGTACACGCATTCCCTTAGACAGTTTTACCGGGAATGTGACATCTACGGTACCGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTCCAAACATGTAACATGTATCCACGCCTTCCCTTGAGTGGGCAATTCAATGCCATCACTGCCCAAGGCAGAACAGACCCAAATCAAAACACAGGCACTTCCATTCAGAACGCAACTATAAAAGCTGCTGCTGATTTGGCTCCTGTAGTTGGTAGCGTGAATACATATCTTGGGAGACCATGGAAAGAGTACTCAAGAACAGTTTATATGCAGTCTTTCATGGATAGTTTGATAAATCCTGCTGGGTGGCATGAATGGAGTGGAGATTTTGCCCTAACCACCTTATACTATGCAGAGTACAATAACACAGGACCTGGTTCAAGCACCCAAAACCGTGTAACGTGGTCTGGTTACCATGTTATCAATGTTACTGATGCGGTTAACTTTACTGTGTCTAACTTCTTGGACGGGGATAGTTGGCTTCCTGCAACTGGCGTTCCATATACGAGTGGATTGATATAA 1692 0.4391 MAFKNLSLLTLCVSLVLSSLSPISIASNNKRDVVPPETLCRSTLYPSYCKTLLANQNGTIFDYGRISVRKSLSQSRKFLNLVNSFLQDRSSLLSLPTTRALEDCQFLAEQNFEYLSNALDNVDKVSDDLPTTEGEDQQTMLSAALTNQETCLEGLQTTASDERVKSELLSSLSDDTKLHSVSLDLFIKGWVPEKKISTSWQPNGRHLGFRNGRLPLRMSNRVRAIYDSARGHGRKLLQDSSNSVLVNDIVVVSQDGSGNFTTINDAIAAAPNNSAASDGYFLIFVTGGVYQEYVSIAKNKKYLMMVGDGINQTIITGDHNVVDNFTTFNSATFAVVAQGFVAVNITFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQTCNMYPRLPLSGQFNAITAQGRTDPNQNTGTSIQNATIKAAADLAPVVGSVNTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALTTLYYAEYNNTGPGSSTQNRVTWSGYHVINVTDAVNFTVSNFLDGDSWLPATGVPYTSGLI* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0730 563 CDD PMEI-like_3 38 190 - -
Vra3g0730 563 Pfam Plant invertase/pectin methylesterase inhibitor 37 184 IPR006501 GO:0004857
Vra3g0730 563 SMART PMEI_2 31 185 IPR006501 GO:0004857
Vra3g0730 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 186 IPR035513 -
Vra3g0730 563 Gene3D - 244 562 IPR012334 -
Vra3g0730 563 SUPERFAMILY Pectin lyase-like 247 561 IPR011050 -
Vra3g0730 563 Pfam Pectinesterase 250 548 IPR000070 GO:0030599|GO:0042545
Vra3g0730 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 188 IPR035513 -
Vra3g0730 563 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Vra3g0730 563 PANTHER PECTINESTERASE 19 562 - -
Vra3g0730 563 PANTHER PECTINESTERASE 19 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0730 Vra-Chr3 7602466 7604650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0730 38 563 Carbohydrate Esterase AT1G02810 60.254 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0730 K01051 - gmx:100813051 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0730 3 7602466 7604650 Vra8g1251 8 28233901 28237905 PCT