Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0728 ATGGCTTCCAAGCTTTCTTATTCTCTCTCAATCTTTCTCTTTCTCTTACCTTTCTTTCACATTGTAATAGTTTCCGCAGACACCGTATCAAATCCTGCAACTCCCGTCTCCCCTGGAACCGCATGCCAATCCACCCCAGACCCATCTTACTGCAAATCCGTTCTCCCTCCCCAAAACGGCAACGTTTATGACTATGGCCGCTTCTCCGTCAAAAAATCACTATCGCAGGCTCGAAAGTTCTTGAGCCTCGTCGATAAATACCTCCAGCGTCGTTCTTCTCTTTCCGCCACCGCAATCCGTGCGCTGCAAGATTGTCGTACTCTCGGGGAACTCAACTTCGATTTCCTTTCCAGTTCCTTCCAAACCGTCAACAAGACAACCAGGTTTCTCCCTAGTTTTCAAGCCGACGACATCCAAACCTTACTCAGCGCCATTCTCACCAACCAGCAAACATGCTTCGACGGTCTCAAAGACACTGCTTCCGCTTGGAGCGTCAGAAACGGTCTCACACTCCCTCTTTCCAACGACACCAAACTCTACAGTGTCTCGCTCGCTCTCTTCACCAAGGGTTGGGTTCCCAGATCCAAAGTCAACACCATGCACCCTACCAAGAAACAACAAGGCTTCCGAAACGGGCGTTTGCCGCTTAAGATGTCCAGCACAACCCGTGCGATCTACGAGTCTGTGAGTAGGAGGAAGCTCCTTCAGGCCTCGGTGGGTCAGGCTGTTGTCGTGAGAGATATCGTCACGGTTAGCCAAGATGGAAGCGGGAACTTCACCACCATCAGTGATGCCATTGCTGCAGCTCCTAACAAATCTTCCTCTACCGATGGATACTTCCTTATCTATGTCACTGCTGGTGTGTATGACGAAATTGTGTCCATTGATAAGAAGAAGACCTACTTGATGATGGTCGGCGATGGTATCAACAAGACAATTATCACCGGCAATCGTAGTGTAGTTGATGGCTGGACAACCTTCAGTTCCGCAACATTAGCTGTGGTAGGGCAAGGATTCGTGGGTGTGAATATGACCATCCGCAACACCGCCGGAGCCGTGAAGCACCAAGCGGTGGCCCTTCGAAACGGAGCAGATTTGTCCACGTTTTACAGCTGCAGCTTCGAGGGGTACCAAGACACGTTGTACGTTCATTCGCTGAGGCAATTCTACAGGGAATGCGACATCTACGGCACCGTAGATTTCATATTCGGAAACGCTAAGGTGGTATTCCAAAGTTGCAACATGTATCCTCGTCTCCCCATGCAGGGTCAATTCAACGCCATCACTGCACAAGGAAGAACAGATCCAAACCAAGACACTGGAATTTCTATCCACAACTGTAGCATTAGAGCAGCTGACGATTTAGCTTCTAGCAGCGGTGTTTCAACATATTTGGGAAGGCCATGGAAGGAATATTCTAGAACTGTTTATATGCAAACTTTTATGGATGGTTTGATCAACGGTGCAGGCTGGCGTGCATGGGACGGTGATTTTGCATTAAGCACTTTGTATTACGCAGAGTACAGCAACAGTGGACCAGGGTCTAACACCAGTAATAGAGTGACGTGGTCTGGTTATCACGTGATTAATGCCACTGATGCAGCTAATTTTACAGTGTCGAATTATTTGCTTGGTGATGATTGGTTACCCCAGACAGGAGTGTCGTACACCGATAACCTGATATAG 1686 0.4852 MASKLSYSLSIFLFLLPFFHIVIVSADTVSNPATPVSPGTACQSTPDPSYCKSVLPPQNGNVYDYGRFSVKKSLSQARKFLSLVDKYLQRRSSLSATAIRALQDCRTLGELNFDFLSSSFQTVNKTTRFLPSFQADDIQTLLSAILTNQQTCFDGLKDTASAWSVRNGLTLPLSNDTKLYSVSLALFTKGWVPRSKVNTMHPTKKQQGFRNGRLPLKMSSTTRAIYESVSRRKLLQASVGQAVVVRDIVTVSQDGSGNFTTISDAIAAAPNKSSSTDGYFLIYVTAGVYDEIVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAKVVFQSCNMYPRLPMQGQFNAITAQGRTDPNQDTGISIHNCSIRAADDLASSSGVSTYLGRPWKEYSRTVYMQTFMDGLINGAGWRAWDGDFALSTLYYAEYSNSGPGSNTSNRVTWSGYHVINATDAANFTVSNYLLGDDWLPQTGVSYTDNLI* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0728 561 Gene3D - 243 560 IPR012334 -
Vra3g0728 561 SUPERFAMILY Pectin lyase-like 244 557 IPR011050 -
Vra3g0728 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
Vra3g0728 561 Pfam Pectinesterase 249 546 IPR000070 GO:0030599|GO:0042545
Vra3g0728 561 SMART PMEI_2 33 186 IPR006501 GO:0004857
Vra3g0728 561 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Vra3g0728 561 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 20 559 - -
Vra3g0728 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 188 IPR006501 GO:0004857
Vra3g0728 561 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Vra3g0728 561 CDD PMEI-like_3 40 191 - -
Vra3g0728 561 PANTHER PECTINESTERASE 20 559 - -
Vra3g0728 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0728 Vra-Chr3 7591661 7593762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0728 9 561 Carbohydrate Esterase AT4G02330 62.369 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0728 K01051 - gmx:100800971 1003.82