Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0725 ATGATCATTAAGCGGAGCATGAAAACTGAAATTCCAAAACGGTTCAAGTCAGAAAAACTAGGGGATTTGGAGATTCACAAGGAGAGGAGAACAAATGGGGTTTTTTCTGCTGAAGGAGTCTCTGGATCCAGTGAGGCGCCGTCCAATTTAAATTCAGTGGACTCCAATGGCGCAATTCGAGACCTGCCCCCGCAATCAGAAGAAGGGGTTCGTGCCATTCAAGCCCAGTCTTCCAGAGTTCGCGCCAAGAAGCTTCCTTGCAGGTTCAGTGATTCTGTTCTTTACGAACGATTAGTGTCTGAAAACGGGAATAGGAATGTTTTTCAAGACGTTGCTGCCACGAGTAGTAAGCGAAATTCTCCTTGTTTTCCATGTTCTGCTGAGCTAAGAGATTCCGAGCACTCTGTTAAGACTGTTAGAAAGACTGTTAGTGGAGGTCGTTCTGTATTTGTTAAAGAGAAAAGTGATGCTGTGCCTGGACTAAGTACCCACGTTCAAAGTGTGAATGGAAGTGTCAAAAGGAAGAGGGATGCTTGCAGATTGGATGATTTTTGTTTGGGTGATATAGTTTGGGCAAAGTGTGGGAAGACCCATCCTGCATGGCCTGCTGTAGTCATCGATCCTATCTTTCGAGCTCCCAAATCCGTCATAAACTGCTGTGTCCCTTCTGCACTTTGTGTTATGTTTTTTGGTTACTCCAAAAACGGGAATCGAAGGGACTATGCCTGGGTGAAGCAGGGGATGATATTTCCCTTCTGGGAATTCATGGACAGGTTTCAGGGGCAGATCAAACAGTACAAAAATAAAGCAAGTGACTTTCACAAGGCAATGGAAGAGGCAATGTTGGCCGAAGATGGCATTTTGGACTTACACCTGGAAGCTGAGCAAAATTTGGTGGCTGCGGATTCCTCGGTTGACCACCATCATTCCTATAAAGATCAGGGTACACTATCTTGTGCTGGCTGTGGTTTGGTGTTGCCATGCAAAACCATAAAGAAGATTAAGGATTCAAGTTGTGCTCCTCAGCACTATTGCAAGCCCTGTGTAAAGTTAATAAAATCGAAACAATATTGTGGGATTTGCAAAAAGATCTGGCATCATTCAGACGGTGGAAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCCGAGTGTGACAAAATTTCCAGTAAACTTTTCAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTTAATTGTAAATTATCAACATCTCATGCACAGAAGTCAAAAAAGATATCAATGGAGGATAGCCAAAAACTTGTATTACCTGAAAATATTGCTGTGGTATGCAATGGCCTGGAAGGAATCTATATTCCAAAGCTTCATTTGGTTATCTGCAATTGCGGCTTGTGTAGTTCTAGGAAGTATACACTTACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAAATTGATCAGTAACCACAAGGCCCCAACGGGAATTCCCCCGCAGTTAGATCAGCAGCAAATTCTGTCCTTTTTACAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTCGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGCCAAATGGCTGTCCACCAAGAATGCTACGGGGCAAATAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGTCTCTGCCCAGTAAAAGGTGGGGCTCTGAAACCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATCACGAGGCAATGGAACCGGCCACTGGAATCCTCAAGATTCCTCGTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTATAAGTTGTTGCAAATGTGCTACACATTTTCATGTGACGTGCGCGTCAAGAATGGGATATATCATGGAATTGCATTCGACAGAAAAGAATGGGACAACAACAACGAAGACGCTAATATACTGTGCAAATCACAGGGTCCCAAACCCAGATTCAGGACTGGTTATACATACACCCATGGAGGTATTCTCACCGACAATTTCGCTTCAAAATCAGCCGAGGTGCTTCAGGGGATCAAGGCTGGCTTCAACAAAGAGTGTAGAACTTCTTGAACCCTCAAACTCTGAAATTCATGACACTGATCCACTCTCCGCTGCCCGAATTCGTGTGTACGAAAGGTCTTCCAATAAGAAGAATGCTGCGCCTGCAATTCACTTGCTTGGGGGGCCAAAGCTTCACTCTTTAAGTGAAATAACTCAATTGAATGGTATCAAGGATGATCAAGCTCTTGAATTTTCTTCTCTTAAGGAACGTCTTCATCATTTACGGAAGACAGAAAGCCAAAGAGTTTGCTTAGGAAAATCAGGAATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTGGTTGAATATCGTGGCGAGCAGGTACGACGTAGTATTGCAGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTACTTGTTCAAGATTAGTGATGAAGTGATGATTGACGCAACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGAGTGATGAGGAGAATCGGATTGTACTTATTGCGAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTACTTGTTCGATGTAGATGAACCAGATGAACTGAAGGTTCCCTGTCTCTGTAAAGCCCCTAATTGTAGGGAATTTATGAACTAG 2919 0.4286 MIIKRSMKTEIPKRFKSEKLGDLEIHKERRTNGVFSAEGVSGSSEAPSNLNSVDSNGAIRDLPPQSEEGVRAIQAQSSRVRAKKLPCRFSDSVLYERLVSENGNRNVFQDVAATSSKRNSPCFPCSAELRDSEHSVKTVRKTVSGGRSVFVKEKSDAVPGLSTHVQSVNGSVKRKRDACRLDDFCLGDIVWAKCGKTHPAWPAVVIDPIFRAPKSVINCCVPSALCVMFFGYSKNGNRRDYAWVKQGMIFPFWEFMDRFQGQIKQYKNKASDFHKAMEEAMLAEDGILDLHLEAEQNLVAADSSVDHHHSYKDQGTLSCAGCGLVLPCKTIKKIKDSSCAPQHYCKPCVKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSHAQKSKKISMEDSQKLVLPENIAVVCNGLEGIYIPKLHLVICNCGLCSSRKYTLTEWERHAGCKAKKWKHSVKVESTMQPLIKLISNHKAPTGIPPQLDQQQILSFLQEKYEPVYAKWTTERCAICRWVEDWEYNKIIICNRCQMAVHQECYGANNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIPRNSFSKTCVICKQSHGSCISCCKCATHFHVTCASRMGYIMELHSTEKNGTTTTKTLIYCANHRVPNPDSGLVIHTPMEVFSPTISLQNQPRCFRGSRLASTKSVELLEPSNSEIHDTDPLSAARIRVYERSSNKKNAAPAIHLLGGPKLHSLSEITQLNGIKDDQALEFSSLKERLHHLRKTESQRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSDEENRIVLIAKTNVSAGEELTYNYLFDVDEPDELKVPCLCKAPNCREFMN* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0725 972 Pfam PHD-finger 357 410 IPR019787 -
Vra3g0725 972 CDD PHD_TCF19_like 358 408 - -
Vra3g0725 972 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 972 - -
Vra3g0725 972 SMART PHD_3 541 588 IPR001965 -
Vra3g0725 972 SMART PHD_3 357 409 IPR001965 -
Vra3g0725 972 SMART PHD_3 652 708 IPR001965 -
Vra3g0725 972 ProSiteProfiles SET domain profile. 830 947 IPR001214 GO:0005515
Vra3g0725 972 ProSiteProfiles Zinc finger PHD-type profile. 355 411 IPR019787 -
Vra3g0725 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 536 590 IPR013083 -
Vra3g0725 972 SUPERFAMILY FYVE/PHD zinc finger 540 604 IPR011011 -
Vra3g0725 972 ProSiteProfiles Zinc finger PHD-type profile. 539 590 IPR019787 -
Vra3g0725 972 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 972 IPR025780 -
Vra3g0725 972 ProSiteProfiles Post-SET domain profile. 956 972 IPR003616 -
Vra3g0725 972 SMART set_7 830 953 IPR001214 GO:0005515
Vra3g0725 972 Gene3D SET domain 815 972 IPR046341 -
Vra3g0725 972 ProSitePatterns Zinc finger PHD-type signature. 542 587 IPR019786 -
Vra3g0725 972 Pfam SET domain 841 946 IPR001214 GO:0005515
Vra3g0725 972 Pfam PHD-zinc-finger like domain 595 707 - -
Vra3g0725 972 Gene3D - 178 285 - -
Vra3g0725 972 PANTHER PHD FINGER PROTEINS 1 972 - -
Vra3g0725 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 709 IPR013083 -
Vra3g0725 972 SUPERFAMILY SET domain 829 968 IPR046341 -
Vra3g0725 972 CDD SET_SETD1-like 819 968 - -
Vra3g0725 972 Pfam PHD-finger 554 588 - -
Vra3g0725 972 Pfam PWWP domain 187 283 IPR000313 -
Vra3g0725 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 414 IPR013083 -
Vra3g0725 972 SUPERFAMILY Tudor/PWWP/MBT 183 285 - -
Vra3g0725 972 ProSiteProfiles PWWP domain profile. 186 255 IPR000313 -
Vra3g0725 972 SMART PostSET_3 956 972 IPR003616 -
Vra3g0725 972 ProSiteProfiles Extended PHD (ePHD) domain profile. 593 708 IPR034732 -
Vra3g0725 972 SMART PWWP_4 184 253 IPR000313 -
Vra3g0725 972 CDD PHD_ATX3_4_5_like 541 587 IPR042011 -
Vra3g0725 972 SUPERFAMILY FYVE/PHD zinc finger 354 416 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0725 Vra-Chr3 7574226 7583516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0725 542 707 C2H2 Transcription Factor Family AT3G14740 33.714 8.12e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra3g0725 zf-HC5HC2H_2 6.8e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0725 - - gmx:100785063 1445.25