Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra3g0725 | ATGATCATTAAGCGGAGCATGAAAACTGAAATTCCAAAACGGTTCAAGTCAGAAAAACTAGGGGATTTGGAGATTCACAAGGAGAGGAGAACAAATGGGGTTTTTTCTGCTGAAGGAGTCTCTGGATCCAGTGAGGCGCCGTCCAATTTAAATTCAGTGGACTCCAATGGCGCAATTCGAGACCTGCCCCCGCAATCAGAAGAAGGGGTTCGTGCCATTCAAGCCCAGTCTTCCAGAGTTCGCGCCAAGAAGCTTCCTTGCAGGTTCAGTGATTCTGTTCTTTACGAACGATTAGTGTCTGAAAACGGGAATAGGAATGTTTTTCAAGACGTTGCTGCCACGAGTAGTAAGCGAAATTCTCCTTGTTTTCCATGTTCTGCTGAGCTAAGAGATTCCGAGCACTCTGTTAAGACTGTTAGAAAGACTGTTAGTGGAGGTCGTTCTGTATTTGTTAAAGAGAAAAGTGATGCTGTGCCTGGACTAAGTACCCACGTTCAAAGTGTGAATGGAAGTGTCAAAAGGAAGAGGGATGCTTGCAGATTGGATGATTTTTGTTTGGGTGATATAGTTTGGGCAAAGTGTGGGAAGACCCATCCTGCATGGCCTGCTGTAGTCATCGATCCTATCTTTCGAGCTCCCAAATCCGTCATAAACTGCTGTGTCCCTTCTGCACTTTGTGTTATGTTTTTTGGTTACTCCAAAAACGGGAATCGAAGGGACTATGCCTGGGTGAAGCAGGGGATGATATTTCCCTTCTGGGAATTCATGGACAGGTTTCAGGGGCAGATCAAACAGTACAAAAATAAAGCAAGTGACTTTCACAAGGCAATGGAAGAGGCAATGTTGGCCGAAGATGGCATTTTGGACTTACACCTGGAAGCTGAGCAAAATTTGGTGGCTGCGGATTCCTCGGTTGACCACCATCATTCCTATAAAGATCAGGGTACACTATCTTGTGCTGGCTGTGGTTTGGTGTTGCCATGCAAAACCATAAAGAAGATTAAGGATTCAAGTTGTGCTCCTCAGCACTATTGCAAGCCCTGTGTAAAGTTAATAAAATCGAAACAATATTGTGGGATTTGCAAAAAGATCTGGCATCATTCAGACGGTGGAAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCCGAGTGTGACAAAATTTCCAGTAAACTTTTCAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTTAATTGTAAATTATCAACATCTCATGCACAGAAGTCAAAAAAGATATCAATGGAGGATAGCCAAAAACTTGTATTACCTGAAAATATTGCTGTGGTATGCAATGGCCTGGAAGGAATCTATATTCCAAAGCTTCATTTGGTTATCTGCAATTGCGGCTTGTGTAGTTCTAGGAAGTATACACTTACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAAATTGATCAGTAACCACAAGGCCCCAACGGGAATTCCCCCGCAGTTAGATCAGCAGCAAATTCTGTCCTTTTTACAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTCGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGCCAAATGGCTGTCCACCAAGAATGCTACGGGGCAAATAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGTCTCTGCCCAGTAAAAGGTGGGGCTCTGAAACCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATCACGAGGCAATGGAACCGGCCACTGGAATCCTCAAGATTCCTCGTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTATAAGTTGTTGCAAATGTGCTACACATTTTCATGTGACGTGCGCGTCAAGAATGGGATATATCATGGAATTGCATTCGACAGAAAAGAATGGGACAACAACAACGAAGACGCTAATATACTGTGCAAATCACAGGGTCCCAAACCCAGATTCAGGACTGGTTATACATACACCCATGGAGGTATTCTCACCGACAATTTCGCTTCAAAATCAGCCGAGGTGCTTCAGGGGATCAAGGCTGGCTTCAACAAAGAGTGTAGAACTTCTTGAACCCTCAAACTCTGAAATTCATGACACTGATCCACTCTCCGCTGCCCGAATTCGTGTGTACGAAAGGTCTTCCAATAAGAAGAATGCTGCGCCTGCAATTCACTTGCTTGGGGGGCCAAAGCTTCACTCTTTAAGTGAAATAACTCAATTGAATGGTATCAAGGATGATCAAGCTCTTGAATTTTCTTCTCTTAAGGAACGTCTTCATCATTTACGGAAGACAGAAAGCCAAAGAGTTTGCTTAGGAAAATCAGGAATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTGGTTGAATATCGTGGCGAGCAGGTACGACGTAGTATTGCAGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTACTTGTTCAAGATTAGTGATGAAGTGATGATTGACGCAACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGAGTGATGAGGAGAATCGGATTGTACTTATTGCGAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTACTTGTTCGATGTAGATGAACCAGATGAACTGAAGGTTCCCTGTCTCTGTAAAGCCCCTAATTGTAGGGAATTTATGAACTAG | 2919 | 0.4286 | MIIKRSMKTEIPKRFKSEKLGDLEIHKERRTNGVFSAEGVSGSSEAPSNLNSVDSNGAIRDLPPQSEEGVRAIQAQSSRVRAKKLPCRFSDSVLYERLVSENGNRNVFQDVAATSSKRNSPCFPCSAELRDSEHSVKTVRKTVSGGRSVFVKEKSDAVPGLSTHVQSVNGSVKRKRDACRLDDFCLGDIVWAKCGKTHPAWPAVVIDPIFRAPKSVINCCVPSALCVMFFGYSKNGNRRDYAWVKQGMIFPFWEFMDRFQGQIKQYKNKASDFHKAMEEAMLAEDGILDLHLEAEQNLVAADSSVDHHHSYKDQGTLSCAGCGLVLPCKTIKKIKDSSCAPQHYCKPCVKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSHAQKSKKISMEDSQKLVLPENIAVVCNGLEGIYIPKLHLVICNCGLCSSRKYTLTEWERHAGCKAKKWKHSVKVESTMQPLIKLISNHKAPTGIPPQLDQQQILSFLQEKYEPVYAKWTTERCAICRWVEDWEYNKIIICNRCQMAVHQECYGANNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIPRNSFSKTCVICKQSHGSCISCCKCATHFHVTCASRMGYIMELHSTEKNGTTTTKTLIYCANHRVPNPDSGLVIHTPMEVFSPTISLQNQPRCFRGSRLASTKSVELLEPSNSEIHDTDPLSAARIRVYERSSNKKNAAPAIHLLGGPKLHSLSEITQLNGIKDDQALEFSSLKERLHHLRKTESQRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSDEENRIVLIAKTNVSAGEELTYNYLFDVDEPDELKVPCLCKAPNCREFMN* | 973 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra3g0725 | 972 | Pfam | PHD-finger | 357 | 410 | IPR019787 | - | |
Vra3g0725 | 972 | CDD | PHD_TCF19_like | 358 | 408 | - | - | |
Vra3g0725 | 972 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE | 1 | 972 | - | - | |
Vra3g0725 | 972 | SMART | PHD_3 | 541 | 588 | IPR001965 | - | |
Vra3g0725 | 972 | SMART | PHD_3 | 357 | 409 | IPR001965 | - | |
Vra3g0725 | 972 | SMART | PHD_3 | 652 | 708 | IPR001965 | - | |
Vra3g0725 | 972 | ProSiteProfiles | SET domain profile. | 830 | 947 | IPR001214 | GO:0005515 | |
Vra3g0725 | 972 | ProSiteProfiles | Zinc finger PHD-type profile. | 355 | 411 | IPR019787 | - | |
Vra3g0725 | 972 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 536 | 590 | IPR013083 | - | |
Vra3g0725 | 972 | SUPERFAMILY | FYVE/PHD zinc finger | 540 | 604 | IPR011011 | - | |
Vra3g0725 | 972 | ProSiteProfiles | Zinc finger PHD-type profile. | 539 | 590 | IPR019787 | - | |
Vra3g0725 | 972 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 972 | IPR025780 | - | |
Vra3g0725 | 972 | ProSiteProfiles | Post-SET domain profile. | 956 | 972 | IPR003616 | - | |
Vra3g0725 | 972 | SMART | set_7 | 830 | 953 | IPR001214 | GO:0005515 | |
Vra3g0725 | 972 | Gene3D | SET domain | 815 | 972 | IPR046341 | - | |
Vra3g0725 | 972 | ProSitePatterns | Zinc finger PHD-type signature. | 542 | 587 | IPR019786 | - | |
Vra3g0725 | 972 | Pfam | SET domain | 841 | 946 | IPR001214 | GO:0005515 | |
Vra3g0725 | 972 | Pfam | PHD-zinc-finger like domain | 595 | 707 | - | - | |
Vra3g0725 | 972 | Gene3D | - | 178 | 285 | - | - | |
Vra3g0725 | 972 | PANTHER | PHD FINGER PROTEINS | 1 | 972 | - | - | |
Vra3g0725 | 972 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 591 | 709 | IPR013083 | - | |
Vra3g0725 | 972 | SUPERFAMILY | SET domain | 829 | 968 | IPR046341 | - | |
Vra3g0725 | 972 | CDD | SET_SETD1-like | 819 | 968 | - | - | |
Vra3g0725 | 972 | Pfam | PHD-finger | 554 | 588 | - | - | |
Vra3g0725 | 972 | Pfam | PWWP domain | 187 | 283 | IPR000313 | - | |
Vra3g0725 | 972 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 349 | 414 | IPR013083 | - | |
Vra3g0725 | 972 | SUPERFAMILY | Tudor/PWWP/MBT | 183 | 285 | - | - | |
Vra3g0725 | 972 | ProSiteProfiles | PWWP domain profile. | 186 | 255 | IPR000313 | - | |
Vra3g0725 | 972 | SMART | PostSET_3 | 956 | 972 | IPR003616 | - | |
Vra3g0725 | 972 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 593 | 708 | IPR034732 | - | |
Vra3g0725 | 972 | SMART | PWWP_4 | 184 | 253 | IPR000313 | - | |
Vra3g0725 | 972 | CDD | PHD_ATX3_4_5_like | 541 | 587 | IPR042011 | - | |
Vra3g0725 | 972 | SUPERFAMILY | FYVE/PHD zinc finger | 354 | 416 | IPR011011 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra3g0725 | Vra-Chr3 | 7574226 | 7583516 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra3g0725 | 542 | 707 | C2H2 Transcription Factor Family | AT3G14740 | 33.714 | 8.12e-22 | 96.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Vra3g0725 | zf-HC5HC2H_2 | 6.8e-29 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra3g0725 | - | - | gmx:100785063 | 1445.25 |