Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0724 ATGACTACGAAGCCAGACATTGAATCCGAATTCGCATATACCTTTATGGTGGGCATTGCCATTCTCCTTGTTCTTCTCATAATCCTCATCGTTCTCTTCAACGTCTGCGTCCGCTTATGCCGCCGTTGCCGCGGGGCTCTCTTGTCCCGTTCGCTTCCCGCTTTTTCCTTCTCTGCCACCGTGCACGGTTCTCTGCAGGAATGTGCCGTGTGCCTGTCGGAATTTGCCGATGGTGATAAAGTTCGTGCACTCCCCAACTGTAAGCATGGTTTCCACACCCACTGCATCGACTTGTGGTTTGCCTGTAACTCCACGTGTCCTCTGTGCCGAACACCGGCCCAACCGATCAAGGGTTGCCCTGACAATGAACCCGGTTCGGTTCCAGTTTCCGAAGCAGAAGAGGGTTGTTCTTCATCTTTGGGTCCCCCAATTGCGTGTCCTAGAGAGGCCTTGGATGTAATTGTTAAGATATGCTAA 477 0.5199 MTTKPDIESEFAYTFMVGIAILLVLLIILIVLFNVCVRLCRRCRGALLSRSLPAFSFSATVHGSLQECAVCLSEFADGDKVRALPNCKHGFHTHCIDLWFACNSTCPLCRTPAQPIKGCPDNEPGSVPVSEAEEGCSSSLGPPIACPREALDVIVKIC* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0724 158 SMART ring_2 68 109 IPR001841 -
Vra3g0724 158 Pfam Ring finger domain 67 110 IPR001841 -
Vra3g0724 158 SUPERFAMILY RING/U-box 51 120 - -
Vra3g0724 158 ProSiteProfiles Zinc finger RING-type profile. 68 110 IPR001841 -
Vra3g0724 158 PANTHER RING-H2 FINGER PROTEIN ATL64 50 132 - -
Vra3g0724 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 118 IPR013083 -
Vra3g0724 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 50 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0724 Vra-Chr3 7572103 7572857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0724 50 118 Rapid Response to Elicitors AT3G16720 53.623 8.33e-22 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0724 - - vra:106756968 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0724 3 7572103 7572857 Vra3g0724 3 7572103 7572857 ECH