Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0723 ATGACTATGGAGCCAGACATTGAATCCAAGTACTCACACAACGGTAAGGTTATGGTGGGCACTGCCATTCTCCTCTTCCTTCTCGTAATCCTCATCATTCTCTTCAACGTCTACGTCCGCTACTGCCGCCGTCTCCGCCGCCACGGCTCTCTCTTGTCCCATTCCCTTCCAACCACCTCCTTCTCCGAACCCTGTCTCGATCCTTCCGTCATCAAGTCCCTTCCCACTTTTTCCTTCTCCGCCGCCGTGAACAGCTCTCTCCAGGACTGCGCCGTGTGCCTGTCGGAGTTCGCCGACGGTGACAGAGTCCGCGTGCTCCCCAACTGTAAGCATGGATTTCACACCCACTGCATCGACGCGTGGTTTGCCTCTCACTCCACGTGTCCTCTGTGCCGTACTCCAGCCCAACCGGCCAAGGGTTGCTCTGACGATGAACCCGGTTCGGGTTCTGTTCCAGTTTCCGAAGTGGACGAGGGTTGTTCTTCGTCTTTGGGTCCCCCAATTGCGTGTCCGAGAAAGGCGTTGGATGTAGTGATAGAGGTGGGAGATGTGGAAAGAGATTTAAATCTTGCGACGGAAGATGACAGATCCAGATGCTCATTGAAAAGGTTTTATAATGCTTAA 624 0.5385 MTMEPDIESKYSHNGKVMVGTAILLFLLVILIILFNVYVRYCRRLRRHGSLLSHSLPTTSFSEPCLDPSVIKSLPTFSFSAAVNSSLQDCAVCLSEFADGDRVRVLPNCKHGFHTHCIDAWFASHSTCPLCRTPAQPAKGCSDDEPGSGSVPVSEVDEGCSSSLGPPIACPRKALDVVIEVGDVERDLNLATEDDRSRCSLKRFYNA* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0723 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 137 IPR013083 -
Vra3g0723 207 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Vra3g0723 207 SUPERFAMILY RING/U-box 70 138 - -
Vra3g0723 207 PANTHER RING-H2 FINGER PROTEIN ATL64 8 157 - -
Vra3g0723 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 157 - -
Vra3g0723 207 SMART ring_2 90 131 IPR001841 -
Vra3g0723 207 Pfam Ring finger domain 89 132 IPR001841 -
Vra3g0723 207 CDD RING-H2_PA-TM-RING 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0723 Vra-Chr3 7568187 7569132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0723 11 140 Rapid Response to Elicitors AT3G16720 39.726 6.09e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0723 - - pvu:PHAVU_001G208400g 323.939