Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0721 ATGGGGATCGATTTGAAGGCAGGAGGTAAGTCCAAAAAGACCAAGCGAACCGCCCCAAAATCCGATGATATTTACCTCAAGCTCCTCGTCAAGTTGTACCGTTTTCTTGTTCGGAGGACTGGGAGTAATTTCAATGCCGTCATTCTCAAGCGTCTTTTCATGAGCAAGGTCAACAAGCCTCCGCTATCCCTCTCTAGATTGATCCGTTACACCAAGGGAAAGGAGGATAAGATAGCTGTGGTGGTTGGGGCTGTGACCGATGATATTCGTGTGTACGAGGTGCCTGCTCTGAAGGTAGCAGCACTGAGGTTCACTGAAACTGCCAGAGCTAGAATTGAGAAAGCTGGCGGGGAATGCCTCACCTTTGATCAACTGGCTCTTAGAGCTCCTCTCGGCCAAAACACGGTTCTTCTTAGAGGTCCTAAGAATGCACGTGAGGCCGTCAAGCACTTTGGACCGGCTCCTGGTGTGCCCCATAGCCACACCAAGCCCTATGTCCGTTCAAAGGGACGGAAATTTGAGCGGGCCAGAGGGAGAAGGAATAGCAGAGGCTTTAGAGTTTGA 564 0.5071 MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGAVTDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0721 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Vra3g0721 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vra3g0721 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Vra3g0721 187 Gene3D - 1 187 - -
Vra3g0721 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0721 Vra-Chr3 7557756 7559674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0721 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.570 2.58e-104 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0721 K02883 - gmx:100306301 340.502