Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0712 ATGGCGTCAGGGTGGGGAATTACAGGCAACAAAGGTCGGTGCTACGATTTCTGGATGGATTTCAGCGAATGCATGTCTCGCTGCCGAGAACCCAAGGACTGTGGTCTTCTCCGAGAAGATTACCTCGAGTGCCTCCACCATTCCAAAGAGTTTCAACGACGTAACCGGATTTACAAGGAGGAGCAGCGCAAAATAAGGGCTGCTGCCAAGAAAGCCAAGGATGATGGGGTTGTTAAGGAACATCATTACTTGCACGGCAACACCACCGATTCCAATCCCCACTTGTCGAAGGTGAAAAAAATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAACCTTCCTGGTGACATCCGTGAAAGAGAAGTTGAAGATTTATTTCTGAAGTATGGTCACATAACTCACATAGATCTAAAGGTTCCCCCAAGACCCCCTGGTTACGCATTTGTTGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATACGTGGACGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGACACAGCAGTCACAGCAATGGACGGGCTGGACGTGGGGTATCCAGACGCTCTGAATATCGGGTTCTAGTCACTGGATTGCCCTCTTCAGCATCCTGGCAGGATCTTAAGGATCACATGCGCAAGGCAGGAGATGTTTGCTTTTCTCAGGTCTTTCATGACGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTTCGGAATGCATTTTCCAAGGGTTATGTTCGAGTGAGGGAATATGATTCGAGGCGGGATTCATCTAGAAGTCCTAGCCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGCCGAAGCCGTAGTTACAGTCGGGACCGGAGCCAAAGCAAATCTCCTAAGGGTAAATCTTCACAGCGTTCACCACCTGCTAAATCTCCATCAAGATCTCCTGCTGCTCGATCTCGCTCAAGATCAAGGTCTCGTTCGTTGTCAGGATCACGGTCGAGGTCCAGATCTCCTTTGCCCCCTCGTAATAAAAGTCCCAAAAGGGGCAGTGCTAGCAGGAGTCCGAGTAGGAGCAGAAGCAGGAGTAAAAGTTTGTCTCGGTGA 1200 0.4917 MASGWGITGNKGRCYDFWMDFSECMSRCREPKDCGLLREDYLECLHHSKEFQRRNRIYKEEQRKIRAAAKKAKDDGVVKEHHYLHGNTTDSNPHLSKVKKMSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPPAKSPSRSPAARSRSRSRSRSLSGSRSRSRSPLPPRNKSPKRGSASRSPSRSRSRSKSLSR* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0712 399 SUPERFAMILY RNA-binding domain, RBD 105 275 IPR035979 GO:0003676
Vra3g0712 399 CDD RRM1_SF2_plant_like 108 178 - -
Vra3g0712 399 MobiDBLite consensus disorder prediction 315 329 - -
Vra3g0712 399 MobiDBLite consensus disorder prediction 172 208 - -
Vra3g0712 399 CDD RRM2_SF2_plant_like 211 286 - -
Vra3g0712 399 Gene3D - 211 288 IPR012677 -
Vra3g0712 399 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 103 389 - -
Vra3g0712 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 176 IPR000504 GO:0003723
Vra3g0712 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 275 IPR000504 GO:0003723
Vra3g0712 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Vra3g0712 399 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 11 52 - -
Vra3g0712 399 MobiDBLite consensus disorder prediction 83 102 - -
Vra3g0712 399 MobiDBLite consensus disorder prediction 379 399 - -
Vra3g0712 399 MobiDBLite consensus disorder prediction 286 399 - -
Vra3g0712 399 Gene3D - 78 210 IPR012677 -
Vra3g0712 399 SMART rrm1_1 108 178 IPR000504 GO:0003723
Vra3g0712 399 SMART rrm1_1 212 285 IPR000504 GO:0003723
Vra3g0712 399 MobiDBLite consensus disorder prediction 172 207 - -
Vra3g0712 399 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 103 389 - -
Vra3g0712 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 182 IPR000504 GO:0003723
Vra3g0712 399 MobiDBLite consensus disorder prediction 330 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0712 Vra-Chr3 7481277 7495146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0712 108 269 Eukaryotic Initiation Factors Gene Family AT1G71770 26.190 7.84e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0712 K12890 - gmx:100796900 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0712 3 7481277 7495146 Vra3g0712 3 7481277 7495146 ECH