Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0708 ATGTCCCTTGCATCTTCAACCCTCTCTTGTGCATTCCCTGTGAAACAAACCTCAGAGGAGACGTTTCTCTCAACTATGCTTCAATGGCTGGGATATATTTTCCTCACACCTTGTCCTCAAAGAGCTATATTGTCTTTCGTTGATGTCGTACTCCTCGTGTTTCTCTTCGTGTTTGCTGCCACCAAGCTCTGGAAAAGGTCCACCTTCAATGGTGGCTCCACTAACGACCTCAGCAGACCATTCATCAGAAAGAACAGACCCGTTTACTCAATAACTGTGCGGTTTAAGTTAACCATAACTGTAGTGGTTGTTTTGACTATACTCTACACGGTTGCTTCTGTTCTTACGTTTAGCAGTACCTCCATGGCGCCGTGGAAGCAGGTTGACGAGGTGTTTTGGTTAGTCCAAGCCATAACACAGGCTGTGCTTGCCTTCTTCATCATCCACGAGAAAAGGATTCAGGTCGTTGCACACCCTCTTTCCGTTCGAGTTTATTGGATTGTATCTTTCTTTGTCATTTCTTTATTCACTGTTTCTGCGGTTATACGTTTGGTCTCGGTGGACGTGGATGAAGCCTTCGGCTTCGGGGTGGATGAGGTGGTCTCTTTCATTTCGTTCCCGCTGTCGTTATTTCTTCTTTTTGTGGCGCTTAAAGGATCCACCGGCATTGTTTTGGCTACAGAAGAAACACGACCACTTGTGGATGGAAAAACTAAGTTGCATGATGGTACTGAGAGAAAATCCGAGGTTACTGGTTTTGCTTCAGCTTCTCTATTATCCAAGGCTTTTTGGATTTGGATAAACCCCTTACTGAGTAAAGGGTACAAGTCCGTGCTGAAGATTGATGATATTCCAACGCTTTCTCCGGAGCATAGAGCTGAGAAAATGTCATCCATTTTTGAATCTAAATGGCGTATTTCAAACGAGACATCAAAGCATCCTGTTAGAATGACTTTGCTTCGGTGCTTTTGGAAGGAGTTAGCCTTAAATGCCGTGCTTGCAATCATTAGGCTCTGTGTCATGTTTGTGGGGCCGATTCTGATACAAAGTTTTGTGGATTTCACATCAGGGAAGAGAAACTCTGAATATGAAGGATACTACCTCGTGTTGATTCTTTTCGTTGCTAAGTTCATCGAAGTCATGGCTACTCATCATTTCAACTTCCAAGCTCAAAAGCTTGGGATGCTTATACGCTCCACTCTTATCTCCACTTTGTATAGAAAGGGGTTAAAGCTATCATTCTCTTCTCGGAAGGAACATGGAGTTGGGACAGTTGTGAATTACATGGCAGTGGATACCCAGCAACTCTCTGACATGATGCTCCAGTTACACGCTGTGTGGATGATGCCACTCCAAGTTGGTATTGCCTTGGTTCTGCTTTACAATTGTTTAGGTGCATCAGTTATAGGCGCGTTTCTTGCTCTGCTCGGTGTTTTTGTCTATTCTGTGATGGGCACCCAAAGAAACAACAAGTTCCAACAAAATCTGATGGTGAGCCGGGACTCCAAAATGAAAGCTGTGAATGAGATGCTTAGCTACATGCGTGTGATCAAGTATCAGGCCTGGGAGGAACATTTCAATCAGAGAATTTTGGGTTTCCGTGAAACAGAGTATGGGTGGCTCTCCAAGCTGCTGTTCTCAATTTGTGGCACCATTGTTGTGTTGTGGAGCACACCGTTTTTGGCGTCAACTCTTACATTTGGAACGGCTATTTTGTTGGGAGTTCAACTTGATGCAGGCACAGTGTTCACTGCAACAGCTGTGTTCAGGTTATTGCAGGAGCCTATTAGGACATTCCCACAGTCTATGATATCTCTTTCACAAGCAAGGATATCACTGGAGAGGTTAGACAAGTTCATGTTGAGCGGAGAATTGTCGAATGATTCAGTTGAGAGAGAGGAAGGATGTGGTGGACAGACAGCCGTGGAAATCATACATGGAACTTTTAGTTGGGATGATGATAACACTCAGCAGGACTTGAAAAATATCAATTTGAATATTAGAAAGGGTGAGCTTACAGCAATTGTTGGGACCGTAGGGTCAGGAAAGTCGTCCCTTCTTGCATCAATTCTTGGAGAGATGCACAAGATTTCTGGAAAGGTTCGGGTTTGTGGGAGTGTTGCTTATGTTGCACAGACATGTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTCGGTTTACCTATGGACAGACAGAGGTACGATGAAGTTATCAGGGCGTGTTGTTTGGAGAAAGATTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAACGTGGTATCAACCTAAGCGGAGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTGTATCAAGACTGTGATGTATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACAGGTTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAGAGGCAAGACCACTATTCTTGTAACACATCAAGTAGATTTCTTACGTAATGTGGATCGTATATTAGTGACGAGGGACGGTAAGATAGTTCAATCAGGGAAATATGATGATCTATTAGAGTCTGGAATGGATTTTAAAGCTCTCGTCGTTGCGCATGAGAGTTCCATGGAATTAGTGGAGTACTGTATGGTCATGCCAGGTGAAAATTTGAACAAACCAACGATAGCTCTAGAGGCAGCTTCAATTAACAGGGGAACCAATGGTGAAAACAATTCTATTGATAAGCCCAAGTGTGGCAAGAAAAGTTCTAAACTCGTCCAAGAAGAGGAGAGAGCAACTGGAAAAGTGAGCTTACGTATGTATAAACTCTATTGCACTGAGGCGTTTGGGTGGTTGGGCATTACAACAGTATTGGTCCTGTCTTTGTTATGGCAAGCGTCTTTGATGGCAAGTGATTATTGGTTGGCATATGAAACCTCAGAAGAACGTGCTAAATTGTTTAACCCTTCTCTGTTCATCTACGTCTATGCAATTATTGCAGTTGTTTCCAGTGTTTTGTTAGTAGCCAGATCCTACTTCTTTACTCTCATGGGGCTAAGGACAGCACAATTATTCTTCACACAAATTCTTCATAGCATCTTGCATGCGCCCATGTCTTTCTTTGACACCACGCCATCTGGAAGAATTCTAAGTAGGGCATCCACTGATCAAGCCAATGTTGATGGCCTTCTACCCTTATACATGGGAGCTATTATAATCATGCACTTATCTTTGCTCGGCATCTTCATCATAACCTGTCAAAATTCTTGGCCAACTGTGATTTTGATAATTCCTCTTGTTTGGTTAAATATGTGGTACCGGGGTTACTATCTTGCATCATCTCGGGAATTTACTCGCATGGATTCAATTACCAAAGCCCCAGTTATTCATCACTTCTCCGAAAGCATTGCAGGGGTCATGACAATCCGTTCATTCAGAAAGCAAAAGATATTCTGTGATGAAAATCTGAAACGGGTGAATGCTAATTTGAGAATAGATTTCCACAACTATAGTTGTAATGAGTGGTTGGGATTCCGCTTAGAATTGATTGGAAGCTTTGCCTTTTGCATTTCTGCCATGTTCATGATCATCTTACCCAGCAGTATCATAAAGCCAGAAAATGTCGGTTTATCTCTCTCTTATGGGTTGTCCTTAAACACTGTTTTGTTCTGGGCTGTATACATGAGTTGTTTCATCGAAAACAAGATGGTGTCTGTCGAGAGGATAAAGCAGTTTACAGATATTCCATCGGAACCAGCATGGAATATCAAGGATCACCTACCTCCTTCAAATTGGCCCGGTCAAGGAAATGTGGATATCAGAGACTTAAAGGTCAGATATCGTCCAAATACTCCTCTTGTGCTCAAAGGCATTACTTTAAGCATTGCTGGGGGTGAAAAAGTTGGTGTTGTGGGTCGAACTGGGAGTGGAAAGTCAACTTTAATTCAAGTATTATTTAGGCTGGTTGAACCTTCGGGAGGGAAAATAGTGGTTGATGGTATTGACATATCCATCTTGGGACTTCACGATCTTAGATCACGGTTTGGCATAATTCCTCAGGAGCCTGTGCTTTTTGAAGGAACAGTCAGAAGCAACATTGATCCAATTGGACAATATACAGATGAAGAAATATGGAAGAGCTTGGAGCGTTGTCAGCTAAAAGATGTTGTTGCAGCTAAGCCTGAAAAACTTGACTCTTCAGTGGTGGAAAACGGAGAGAACTGGAGTGTGGGGCAAAGACAGTTGCTTTGTCTAGGGCGAGTTATACTTAAGAAAAGCCGACTTTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATAGTGTTATTCAAAAGATCATAAGAGAGGATTTTGCAGCATGCACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTAACAGAGTTTTAGTTGTAGACGCAGGGCGAGCGAAAGAATTTGATAAGCCCTCCAATTTGCTTCAGAGAGAATCTCTGTTTGGGGCATTAGTTCAGGAATATGCCAACCGATCCAGTGGACTATAA 4524 0.4277 MSLASSTLSCAFPVKQTSEETFLSTMLQWLGYIFLTPCPQRAILSFVDVVLLVFLFVFAATKLWKRSTFNGGSTNDLSRPFIRKNRPVYSITVRFKLTITVVVVLTILYTVASVLTFSSTSMAPWKQVDEVFWLVQAITQAVLAFFIIHEKRIQVVAHPLSVRVYWIVSFFVISLFTVSAVIRLVSVDVDEAFGFGVDEVVSFISFPLSLFLLFVALKGSTGIVLATEETRPLVDGKTKLHDGTERKSEVTGFASASLLSKAFWIWINPLLSKGYKSVLKIDDIPTLSPEHRAEKMSSIFESKWRISNETSKHPVRMTLLRCFWKELALNAVLAIIRLCVMFVGPILIQSFVDFTSGKRNSEYEGYYLVLILFVAKFIEVMATHHFNFQAQKLGMLIRSTLISTLYRKGLKLSFSSRKEHGVGTVVNYMAVDTQQLSDMMLQLHAVWMMPLQVGIALVLLYNCLGASVIGAFLALLGVFVYSVMGTQRNNKFQQNLMVSRDSKMKAVNEMLSYMRVIKYQAWEEHFNQRILGFRETEYGWLSKLLFSICGTIVVLWSTPFLASTLTFGTAILLGVQLDAGTVFTATAVFRLLQEPIRTFPQSMISLSQARISLERLDKFMLSGELSNDSVEREEGCGGQTAVEIIHGTFSWDDDNTQQDLKNINLNIRKGELTAIVGTVGSGKSSLLASILGEMHKISGKVRVCGSVAYVAQTCWIQNGTIEENILFGLPMDRQRYDEVIRACCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGSEIFKECVRGALRGKTTILVTHQVDFLRNVDRILVTRDGKIVQSGKYDDLLESGMDFKALVVAHESSMELVEYCMVMPGENLNKPTIALEAASINRGTNGENNSIDKPKCGKKSSKLVQEEERATGKVSLRMYKLYCTEAFGWLGITTVLVLSLLWQASLMASDYWLAYETSEERAKLFNPSLFIYVYAIIAVVSSVLLVARSYFFTLMGLRTAQLFFTQILHSILHAPMSFFDTTPSGRILSRASTDQANVDGLLPLYMGAIIIMHLSLLGIFIITCQNSWPTVILIIPLVWLNMWYRGYYLASSREFTRMDSITKAPVIHHFSESIAGVMTIRSFRKQKIFCDENLKRVNANLRIDFHNYSCNEWLGFRLELIGSFAFCISAMFMIILPSSIIKPENVGLSLSYGLSLNTVLFWAVYMSCFIENKMVSVERIKQFTDIPSEPAWNIKDHLPPSNWPGQGNVDIRDLKVRYRPNTPLVLKGITLSIAGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIVVDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEEIWKSLERCQLKDVVAAKPEKLDSSVVENGENWSVGQRQLLCLGRVILKKSRLLFMDEATASVDSQTDSVIQKIIREDFAACTIISIAHRIPTVMDCNRVLVVDAGRAKEFDKPSNLLQRESLFGALVQEYANRSSGL* 1508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0708 1507 CDD ABCC_MRP_domain1 642 842 - -
Vra3g0708 1507 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Vra3g0708 1507 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524
Vra3g0708 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1258 1498 IPR027417 -
Vra3g0708 1507 SMART AAA_5 669 850 IPR003593 -
Vra3g0708 1507 SMART AAA_5 1291 1475 IPR003593 -
Vra3g0708 1507 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 88 1506 - -
Vra3g0708 1507 Gene3D - 1249 1498 IPR027417 -
Vra3g0708 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 862 IPR027417 -
Vra3g0708 1507 Pfam ABC transporter 1282 1430 IPR003439 GO:0005524
Vra3g0708 1507 Pfam ABC transporter 660 793 IPR003439 GO:0005524
Vra3g0708 1507 SUPERFAMILY ABC transporter transmembrane region 932 1245 IPR036640 GO:0005524|GO:0016021
Vra3g0708 1507 SUPERFAMILY ABC transporter transmembrane region 318 616 IPR036640 GO:0005524|GO:0016021
Vra3g0708 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 328 608 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0708 1507 CDD ABCC_MRP_domain2 1263 1483 - -
Vra3g0708 1507 Gene3D - 620 876 IPR027417 -
Vra3g0708 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 865 IPR003439 GO:0005524
Vra3g0708 1507 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 88 1506 - -
Vra3g0708 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1267 1499 IPR003439 GO:0005524
Vra3g0708 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 951 1228 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0708 1507 CDD ABC_6TM_ABCC_D2 948 1240 IPR044726 GO:0140359
Vra3g0708 1507 Pfam ABC transporter transmembrane region 329 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0708 1507 Pfam ABC transporter transmembrane region 981 1201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0708 1507 Gene3D ABC transporter type 1, transmembrane domain 308 619 IPR036640 GO:0005524|GO:0016021
Vra3g0708 1507 Gene3D ABC transporter type 1, transmembrane domain 911 1246 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0708 Vra-Chr3 7456711 7463119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0708 642 858 Calmodulin-binding Proteins AT2G36910 33.906 1.82e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0708 - K05666 gmx:100808752 2407.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1230 8 27896404 27904900 Vra3g0708 3 7456711 7463119 PCT