Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0707 ATGTTCTTTTCATCTCCAACATGGATAAAATCCTTCTCCTGTGCATTCCCCGTGAAGCAAACCTCAGGGGAGATGTTTATCTCAACTATGCTTCAATGGCTGAGATTTTTCTTCCTCTCACCGTGTCCTCAAAGAACTATATCATCTTTCGTCGATGTCGTGTTCCTCTTGTTTCTCTTCGTGTTTACTATCACCAAGCTCTGGAAAAGGCTCACCTCCCATGGCGATTTCGGCACTCACCTAAACGAACCACTCGTCAGAAACAGCAGATCCATTTTCTTAACTATTCGGTTCAAGCTAACCTTAACCGCAGAGGTTGCTTTGACTATACTTTACACGGTTGCTACCGTTCTTGCGTTTAGCAGTTCCTCCAAGGTGCCGTGGAAGCAAGTTGACGACGTGTTTTGGATAGTCCACGCCATAACACATGTGGTGCTTGCATTCGTGATCATCCACGAGAAAATATTTGACGCTGTTACTCACCCTCTTGCGCTTCGTGTTTATTGGGTTGTGAATTTCTTTATCACTTCGTTGTTCACAGTTTCTGCTGTTATGCGTTTGGTCATCATCGTGGACGTGAATGAAAGCAACGACTTCAAGGTGGATGACGTGGTCTCTTTCATTTCACTCCCTCTGTCGTTATTTCTTCTTTTTGCTGGGGTTAAAGGATCCACCGGTATTGTCTTGTCGACAGAAGAAAGTCGGCAACTTGTTGAGGAGGAAACTAGGTTGTATGACGGGAGTGAGGGAAAGTCGGAGGTCACTGACTTCGCTTCAGCTTCTATGTTATCTAAGGTTTTCTTTATTTGGATAAATCCATTGTTGAGTAAAGGGTACAAGTCTGCACTGAAGACTGATGATGTTCCAACGCTTTCTCCACAGCACAGAGCTGAGAGGATGTTATCTATTTTTGAATTAAAATGGCCAAAATCAAACGAGAAGTCGAAGCACCTGGTTAGAATGACTTTGCTCCGTTGCTTTTGGAAGGAGTTGGCCTTCAATGTCGTGCTTGCAATCATTAGGCTCTGTGTCATGTTTGTGGGGCCAGTTCTGATTCAAAGTTTTGTGGATTTCACATCAGGGAATAGAAGCTCTGAATATGAAGGGTACTACCTCGTGTTGATTCTTCTCGTTGCTAAGTTCATTGAAGTTGTGAGTACTCATCATTTCAACTTCCAATGTCAGAAGCTTGGGACGCTTATACGGAGCGCTGTTATCCCTGCTTTGTACGAGAAGGGGTTAAAACTATCATTCTCTGCTCGGCAGGATCATGGGATAGGAACCATTGTTAATTACATGGCTGTGGATACCCAGCAACTCTCTGACATGATGCTTCAGTTAAATGCTGCTTGGATGATGCCACTTCAGGTTGCCATTGGCATGTTTCTACTTTACAATTGTCTTGGTGCCTCAGTGATCACTGCTTTTCTTGGTCTTCTTGGTGTTTTTGTGTTTGCTGTGATCGGTACCCGCAGGAACAACCGCTTCCAGTATAATGTGATGAAGAACCGCGACTCGAGAATGAAAGCTGTGAATGAGACGCTTAATTACATGCGTGTGATCAAGTTTCAGGCCTGGGAGGAACATTTCAACCAGAGAATTATGGGATTCCGTGAGACTGAATTTGGATGGCTCTCCAAGTTGATGTTCTCAATATGTGGCAATATTGTTGTGATGTGGAGCACGCCCTTGTTGATATCAACTCTCACGTTTGGAATGGCTCTTTTGCTGGGAGTTCAACTTGATGCTGCTACGGTCTTCACAACAACAACTGTGTTCAAGATATTGCAGGAGCCCATTAGGACATTCCCACAGTCTATGATATCTCTCTCACAAGCATTAATATCATTGGAGAGACTAGATAAGTTCATGTTGAGCAGGGAATTGTTGGATGATTCAACTGAGAGAGAAGAAGGATGTGGTGGACAAACATCAGTGGAAATCATAGATGGGACTTTTAGTTGGGATGATGATAACACGCACCAGGACTTGAAAAATATCAATTTGGAGATAAAAAAGGGAGAGATTTCAGCAATTGTTGGGACTGTAGGGTCAGGAAAGTCCTCTCTCCTCGCATCAATTCTTGGAGAGTTGCGTAAGATTTCTGGAAAGGTTCGGGTTTGTGGAAGTGTTGCTTATGTTGCACAAACATCTTGGATTCAGAATAGAACTATTGAAGAAAACATTCTCTTTGGTTTACCAATGGACAGGCAGAGGTACAATGAAGCTATCAGGGTTTGTTGTTTGGAGAAAGACTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAGCGTGGTATCAACCTGAGTGGAGGCCAAAAGCAGCGTATACAACTTGCCAGGGCTGTTTATCAAGACTGTGATGTATATCTTCTCGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGTTCCGAAATATTTAAGGAATGTGTGAGGGGAGCTCTAAAAGGCAAGACCACTGTTCTTGTTACGCACCAAGTAGATTTCCTACATAATGTGGATCAGATATTAGTGATGAGGGACGGCATGATAATCCAATCAGGAAAGTACAATGATCTAGTTGATTCTGGACTGGATTTTAAAGCTCTGGTGGTTGCTCATGAGACCTCCATGGAACTGGTGGGGCAGAGTGTGGTCGTGCCCGCTGAAAATTTGAACAGGCCAACAAAAGCTTCAGCGGTGACTTCTATTTACAAGGGAGCCAGAGGTGAAAGCAATTCTCTTGAACAGGCTGTGTCTAGCAAGAAAAGTTCTAAACTCATCAAAGAAGAGGAAAGAGAAACCGGCAAAGTGAGCTTACATATCTATAAACTCTACTGCACCGAGGCTTTTGGCTGGTGGGGAATTACTTTAGTATTTGTCCTTTCTTTGTTATGGCAAGGATCTTTGATGGCAAGTGATTATTGGCTGGCGTATGAAACCTCAATGGAAAGTGGACTGTTTAACCCTTCTCTCTTCATGTCCATTTATACAATTATTACCGCTGTTTCGGTTGTCTTGGTGGTCACGAGAACTTACTTCTTTACACTCTTGGGGCTAAAGACTGCACAAATTTTCTTCACACAAATTCTTCGTAGCATCTTGCATGCGCCTATGTCTTTCTTTGACACTACTCCATCTGGGAGAATTCTTAGCAGGGCTTCCTCTGATCAGAGCAATGTTGATGTCCTACTCCCCTTGTTCACGGGAGTTGTCATTGCCATGTATATTACAGTGCTCAGCATCTTCATCGTCACCTGTCAAAATTCATGGCCAACAGTGTTTTTGATATTCCCTCTTATTTTGTTGAATATATGGTATAGGGGTTACTATCTAGCATCATCTCGTGAATTAACTCGTCTGGATTCAATTACCAAAGCACCAGTTATTCATCACTTCTCTGAAAGCATTGCTGGGGTCATGACAATCCGTGCATTCAGACAACAGAAGAATTTTTGTGAAGAAAATCTCAAACGGGTGAATGCTAATTTACGTATGGATTTCCACAACTATAGCTGCAATGTGTGGTTGGGAGTGCGCTTAGAGTTGCTTGGAAGCTTTGTCTTTTGCGTTTCTGCATTGTTCATGATCATTTTACCCAGTAGTATCATAAAGCCAGAAAATGTTGGTTTGTCTCTTTCTTACGGGTTGTCCTTAAACGGTGTCTTGTTCTGGGCTGTATTCATGAGTTGTTTCATCGAAAACAAGATGGTGTCTGTTGAGAGGATAAAGCAGTTTACATATATTCCACCGGAACCGGCATGGAATATCAAGGATCACCTACCTCCTTCAAATTGGCCCAGTCAAGGCAATGTAGATATCAGAGACTTGCAGGTCAGATATCGTCCAAATACTCCTCTTGTGCTCAAAGGCATTACTTTAAGCATTACCGGAGGCGAAAAAGTCGGTGTTGTGGGTCGAACTGGGAGTGGAAAGTCAACTTTAATTCAAGTATTATTTAGGCTGGTGGAACCTTCGGGAGGGAAAATAGTGGTTGATGGTATTGACATATCCATCTTGGGACTTCACGATCTTAGATCACGGTTTGGCATAATTCCTCAGGAGCCTGTGCTTTTTGAAGGAACAGTCAGAAGCAACATTGATCCAATTGGACAATATACAGATGAAGAAATATGGAAGAGCTTGGAGCGTTGTCAGCTAAAAGATGTTGTTGCAGCTAAGCCTGAAAAACTTGACTCTTCAGTGGTGGAAAACGGAGAGAACTGGAGTGTGGGGCAAAGACAGTTGCTTTGTCTAGGGCGAGTTATACTTAAGAAAAGCCGACTTTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATAGTGTTATTCAAAAGATCATAAGAGAGGATTTTGCAGCATGCACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTAACAGAGTTTTAGTTGTAGACGCAGGTTTGGCGAAAGAATATGACAAGCCTTCCAATTTGCTTCAGAGAGAATCTCTGTTCGGGGCATTAGTTCAAGAATATGCCAACCGATCCACTGAACTATAA 4533 0.4278 MFFSSPTWIKSFSCAFPVKQTSGEMFISTMLQWLRFFFLSPCPQRTISSFVDVVFLLFLFVFTITKLWKRLTSHGDFGTHLNEPLVRNSRSIFLTIRFKLTLTAEVALTILYTVATVLAFSSSSKVPWKQVDDVFWIVHAITHVVLAFVIIHEKIFDAVTHPLALRVYWVVNFFITSLFTVSAVMRLVIIVDVNESNDFKVDDVVSFISLPLSLFLLFAGVKGSTGIVLSTEESRQLVEEETRLYDGSEGKSEVTDFASASMLSKVFFIWINPLLSKGYKSALKTDDVPTLSPQHRAERMLSIFELKWPKSNEKSKHLVRMTLLRCFWKELAFNVVLAIIRLCVMFVGPVLIQSFVDFTSGNRSSEYEGYYLVLILLVAKFIEVVSTHHFNFQCQKLGTLIRSAVIPALYEKGLKLSFSARQDHGIGTIVNYMAVDTQQLSDMMLQLNAAWMMPLQVAIGMFLLYNCLGASVITAFLGLLGVFVFAVIGTRRNNRFQYNVMKNRDSRMKAVNETLNYMRVIKFQAWEEHFNQRIMGFRETEFGWLSKLMFSICGNIVVMWSTPLLISTLTFGMALLLGVQLDAATVFTTTTVFKILQEPIRTFPQSMISLSQALISLERLDKFMLSRELLDDSTEREEGCGGQTSVEIIDGTFSWDDDNTHQDLKNINLEIKKGEISAIVGTVGSGKSSLLASILGELRKISGKVRVCGSVAYVAQTSWIQNRTIEENILFGLPMDRQRYNEAIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGSEIFKECVRGALKGKTTVLVTHQVDFLHNVDQILVMRDGMIIQSGKYNDLVDSGLDFKALVVAHETSMELVGQSVVVPAENLNRPTKASAVTSIYKGARGESNSLEQAVSSKKSSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITLVFVLSLLWQGSLMASDYWLAYETSMESGLFNPSLFMSIYTIITAVSVVLVVTRTYFFTLLGLKTAQIFFTQILRSILHAPMSFFDTTPSGRILSRASSDQSNVDVLLPLFTGVVIAMYITVLSIFIVTCQNSWPTVFLIFPLILLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFRQQKNFCEENLKRVNANLRMDFHNYSCNVWLGVRLELLGSFVFCVSALFMIILPSSIIKPENVGLSLSYGLSLNGVLFWAVFMSCFIENKMVSVERIKQFTYIPPEPAWNIKDHLPPSNWPSQGNVDIRDLQVRYRPNTPLVLKGITLSITGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIVVDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEEIWKSLERCQLKDVVAAKPEKLDSSVVENGENWSVGQRQLLCLGRVILKKSRLLFMDEATASVDSQTDSVIQKIIREDFAACTIISIAHRIPTVMDCNRVLVVDAGLAKEYDKPSNLLQRESLFGALVQEYANRSTEL* 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0707 1510 CDD ABC_6TM_ABCC_D1 333 620 IPR044746 GO:0140359
Vra3g0707 1510 Gene3D - 1252 1501 IPR027417 -
Vra3g0707 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 954 1231 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0707 1510 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 92 1509 - -
Vra3g0707 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 335 612 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0707 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 866 IPR027417 -
Vra3g0707 1510 Coils Coil 1139 1159 - -
Vra3g0707 1510 CDD ABC_6TM_ABCC_D2 952 1243 IPR044726 GO:0140359
Vra3g0707 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1261 1501 IPR027417 -
Vra3g0707 1510 Pfam ABC transporter 664 797 IPR003439 GO:0005524
Vra3g0707 1510 Pfam ABC transporter 1285 1433 IPR003439 GO:0005524
Vra3g0707 1510 SUPERFAMILY ABC transporter transmembrane region 322 624 IPR036640 GO:0005524|GO:0016021
Vra3g0707 1510 SMART AAA_5 1294 1478 IPR003593 -
Vra3g0707 1510 SMART AAA_5 673 854 IPR003593 -
Vra3g0707 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 646 869 IPR003439 GO:0005524
Vra3g0707 1510 Gene3D - 625 881 IPR027417 -
Vra3g0707 1510 CDD ABCC_MRP_domain2 1266 1486 - -
Vra3g0707 1510 Gene3D ABC transporter type 1, transmembrane domain 913 1249 IPR036640 GO:0005524|GO:0016021
Vra3g0707 1510 Gene3D ABC transporter type 1, transmembrane domain 308 624 IPR036640 GO:0005524|GO:0016021
Vra3g0707 1510 SUPERFAMILY ABC transporter transmembrane region 949 1248 IPR036640 GO:0005524|GO:0016021
Vra3g0707 1510 CDD ABCC_MRP_domain1 646 845 - -
Vra3g0707 1510 ProSitePatterns ABC transporters family signature. 771 785 IPR017871 GO:0005524
Vra3g0707 1510 Pfam ABC transporter transmembrane region 953 1204 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0707 1510 Pfam ABC transporter transmembrane region 332 599 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0707 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1270 1502 IPR003439 GO:0005524
Vra3g0707 1510 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 92 1509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0707 Vra-Chr3 7446591 7452947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0707 646 1501 Calmodulin-binding Proteins AT2G36910 24.537 1.89e-59 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0707 - K05666 gmx:100808752 2489.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0707 3 7446591 7452947 Vra3g0707 3 7446591 7452947 ECH