Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0685 ATGTCAAATATTTCAGCTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAACCCAACACCAACACCCACAAAACCACCTTCATGACTCTACTTCAGGACCATCTGCTGCTTCCACTAATCTACAAACCAAGAAGAAAAGAAACCTTCCAGGAACCCCAGGCAAATACTCAACTAAAATAGACCCCAGTGCTGAAGTTGTTGCTTTATCACCGACCACACTGATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAATCTTCAGTTGCACCGCAGAGGTCACAATCTTCCGTGGAAACTGAGGCAACGAACAAGCACTGAGGTTAAGAAACGTGTGTATGTTTGCCCTGAGCCATCATGCGTGCACCATAACCCAGGTCGTGCATTAGGAGACCTCACTGGCATCAAAAAGCACTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATACGCAGTGCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACCAGGGAATACAAATGTGACTGTGGAACAATATTTTCCAGGAGAGATAGTTTTATCACTCACAGAGCTTTCTGTGATGCATTAACTGAAGAAAACAACAGAGTGAACCAGGGTCTGACAAGTGGCATGCCACCAAACCTGCAGAATCAAATACCGGATCTTATGTCTACCATGCCTCTAAACACTAGTCCCAACACAGCATATGACCCTAAGAACCCACTGAAATCACTCCCCCAAGAACTTGTCCCAATACCATTCAAGTCTATGAGCATGGGAGGGGGCATGTTCTCTACCAATGCTGGTGCACTTTTTGGTGGCCCAAAAAGCATGTCTCCTTCTTCTTCCAGCCTCCAACTGGGTTCCAACACCTCATCAAGCTTCAATTACTTGCAAGACAACAAAAACGGAGGACTAATTGCTGCCTCGGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATACCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTAGTAGCACTGCTGCTCCCGATCATGTTTCTTCCACTAGGCCACCATATTCTGGGGCCATGCTGCAGCATAACAACTCCTACGACCATTTCTCTCCACAGCCTGATCTGTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAATCAGTTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACACCAACACTGCCGTGTCTGCTATGAACGATGTGGGAATGTTCAGCCAAATGCCTCTGGGGAGTGACCACAATCCGGGATTGATGAAGAATGTGGAACAAGAAGCTAGTAATTGTTCTGGTTTGATCCATGGAAAAGACGTGGTTGAAGGTAACCCAATGCAGGCATCAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTTTTGGGCATTGGCGGTTCAACTTCTAGAGTCATGAACCATTTTCATCACCATTTTCCACACGAGGATTCATCAGCTATGGAGGAACCCATATGGGATGTTTAA 1581 0.4579 MSNISADEGSFSSGNNGEEVHQETQHQHPQNHLHDSTSGPSAASTNLQTKKKRNLPGTPGKYSTKIDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPGRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQNQIPDLMSTMPLNTSPNTAYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKSMSPSSSSLQLGSNTSSSFNYLQDNKNGGLIAASAQMSATALLQKAAQMGATASNTINSPMMQKGFVSSTAAPDHVSSTRPPYSGAMLQHNNSYDHFSPQPDLSNMAGVSGGGAFINQLFHKGQEISQVFDTNTAVSAMNDVGMFSQMPLGSDHNPGLMKNVEQEASNCSGLIHGKDVVEGNPMQASRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSSAMEEPIWDV* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0685 526 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Vra3g0685 526 Gene3D Classic Zinc Finger 86 124 - -
Vra3g0685 526 SMART c2h2final6 86 108 IPR013087 -
Vra3g0685 526 SMART c2h2final6 127 157 IPR013087 -
Vra3g0685 526 SMART c2h2final6 162 182 IPR013087 -
Vra3g0685 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 510 - -
Vra3g0685 526 MobiDBLite consensus disorder prediction 1 20 - -
Vra3g0685 526 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 510 - -
Vra3g0685 526 Gene3D Classic Zinc Finger 125 210 - -
Vra3g0685 526 MobiDBLite consensus disorder prediction 1 65 - -
Vra3g0685 526 Pfam Zinc finger, C2H2 type 86 108 IPR013087 -
Vra3g0685 526 MobiDBLite consensus disorder prediction 31 53 - -
Vra3g0685 526 SUPERFAMILY beta-beta-alpha zinc fingers 85 183 IPR036236 -
Vra3g0685 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0685 Vra-Chr3 7310549 7313223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0685 50 364 IDZ Gene Family AT3G50700 54.360 9.11e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0685 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0685 - - gmx:100782774 918.302