Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0684 ATGGATGCGTGGAACGAAGATTTTGCGGAGCAGGAGATTGGGAACTCCGCGGAATCGTTCCAAAAGTTTTTGCTCTCGCAGAGAGATCTTTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTCAACCCTCTCTCTCAAGAAATGGCAGCTGGTGCTTTGTCAATAAAAATTGGAAAAAGACCTAGGGATTTATTGAATCCAAAGGCTGTAAATTACATGCAATCAATTTTTTCGATTAAAGATTCTATTAGCAAAAAGGAGTTGCGCGAGATCAGTGCTTTATTTGGTGTCACAGCGACGCAGGTGCGTGACTTTTTCACTGGGCAGCGCTCAAGAGTGAGGAGACTAGTGCAGCTTTCAAAAGAGAGGGCACTAGGTTCCAATTCTTGTGAAGATCCTCACGATGATAAAATAATTCCTGATCCTGTTAGACTAAGTAATCCAGCTTCCGTAAACTCTACTATCCCATCCAGTGCTGAAGAAGCATCTTGTACAACACAGGATGCAACCTTGCCTGACCTAGATGATTCAGATAAACATTTTGTTGATAATATTTTTAGTTTAATGCAACAAGAAGAGACATTTTCCGGGCAAGAGAAATTGATGGAGTGGATATTGACGATACAGAATTTTTCAGTATTGTTGTGGTTTTTGAGCAGAGGGGGTGGAATAACTTTAGCTACTTGGCTGAGTAAGGCAACTGCTGAGGAGCAAACCAGTGTCCTTCTTCTTATCTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCCATTCCCATGCACATATCAGCTATATTGCAGAGTGTAAATAAACTTCGGTTCTACAGGACATCAGACATATCAAACAGGGCTAGGATTTTGTTATCAAAGTGGAGCAAATTATTAGCGAGGAACCAAGTAATAAAGAAGCCCAATGGTGTTAGGCCTTCTAGTGATGGGCATAAAGAGTTGATTTCTCAGAGTATTGGTCAATTTGTGGGCTCTGAATCATGGCATTCCAATATTGATGTTCCTGAAGACTTTCTTTCACTTTCAACCGAATCTCTGGACAATTTCAGGAAACTGGGATCTCCACAAGCTGCGAAATTGTTGCCTCCTAGCTTGGATGATTCTAATAAAAAGTCTACATTTGGTGTTTCTTCATCTCAATCTAGAGAGCGCCGAAAAGTGCAATTGGTGGAACAGCCAGGCCAGAAGTCAGTTAGCAGAAGTTCACAGGTGACAAGAGCAGGGTCTGTAAGTCAAGGTCGGCCCATGTCTGCTGATGATATCCAGAAAGCAAAAATGCGTGCTTTATTTATGCAGAATAAGTATGGGAAATCCGGTTCAAAAGAAAGTAAAGAAACAAAGATTGATAGTCTGAATAAACAACCTCAGACAATTCCTGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCCTACTCCCAAAATTGATGAAAACAAGAAACCTTTGTTACTTGCCTCTAAAACCAGCAATAGGCTGGAGGCTTATTCAAAACCGAAAGTGGATGTGAAAGAACCTCTCTGGGAGAAGTGCATGAGGATTCAGACACCATGGAAAACACCAGCAGAAGTGGAACTTAAAGATAGCTGGAGCGTTGGTGGCGGGGGAAACAGCAAAGAGGTTGATGTCCAGAGAAACAGAGAACGCAGGGAAAAGGAAACTATATATAAAACTATCCAAGAAATCCCACCTAACCCCAAGGAGCCTTGGGACATTGAAATGGACTATGATGACACTTTGACATTGGAAATTCCTATTGAACAGTTACCAGATGGTGACGGTGCAGACATAGCAGTTTCCCCCAATCAGGTTGTAGCTCATACTGTTGAAGGGGTGGCCTCCACTTCTTCGACAAGTGTGGCTCCTGCTGAGCCTGATTTAGAATTGCTTGCCGTACTGCTGAAAAATCCAGAGTTGGTATTTGCCTTAACTTCTGGACAAGCGGGTAGCATACCGGGTGAAGACGTAGTGAAGCTGCTTGACATGATCAAGAGAGGAGGTGCGAACTTGGGTTTAAGTGAAAATACAAATGGGAGCTATGGCACGAGTGTAAAAGCCCCCGATAAGGTGGAAGTTTCGCTCCCATCTCCAACCCCTTTAAGCGATCCAAGAACGAATGGATGGAGCTCAGAAGCATCAAAAAACCCCTTTTCACGGCGAAGTGTAGCATCTGACAGAATTATCCAGAACCATGCTGCAGTGACAACTACCAACTTACTAACTCAGATTCCCATGACTAGCACTACTGCACTAAGGCAACAGCCAGCAGTTGTGGTTTCATCTTCGAGGCATCTCTCAAACACAACAGTTTCTCCATATTCACTGCATCAGGCAACTAATGTTAATCCTGAAAAACAACAACCACTGGGGCATGTACAAATACCATCCTCAAATGTAGGTTTAACCATGAAGAAGAACTTAATCACTACCAATGCACCTTCAGTTAACTATTCTGGCACTCATTCAGCTGTAGCAATGCGGGGTAATGGCACCAATTATGTAAAACCCGTACATAGTCTGAGTGTACAACACGAGGGTGTGTCGAATTCCTTCCCACAGTCATCCTTCAAGCTACCCTCACCAACGCCGTCAAATTCAGTCTCACAGCAGCAAAGACATCAACAACATATAGTCCAGGAAGCCCATTACATTGAACCTCCGTATCGAAACCCTAGCCGTTCCTACCCACCACAAACCGAAAAATCAGACCATGGGTCTGAAAGCGCGTGGAGAATTAGGCAAGACATTCCATTCAGTTCTCAAAGAAATCCTAACTATAATACAATGGTTGGGGGATCCAGGCAATCTGGTTTTTGGGATAGAAATAATCAAGGAGGGGAAGATTTTGAATCATGGAGTCCTGAAAATAGTCCAACTAGAAATCCTAGGTATATACCAGGTAGAAACTACCCAGATTCCAGAGTGAATCATGGAAGAAATCATAGACCTGAATGGTCAAGACAGAGGGGTTCTTCTGAACACTGGGACCCTGACAGGCAGGGAAATAGAAAGTGGCATGATCAGAGGCGATAA 3066 0.4328 MDAWNEDFAEQEIGNSAESFQKFLLSQRDLFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSIFSIKDSISKKELREISALFGVTATQVRDFFTGQRSRVRRLVQLSKERALGSNSCEDPHDDKIIPDPVRLSNPASVNSTIPSSAEEASCTTQDATLPDLDDSDKHFVDNIFSLMQQEETFSGQEKLMEWILTIQNFSVLLWFLSRGGGITLATWLSKATAEEQTSVLLLILKVLCHLPLHKAIPMHISAILQSVNKLRFYRTSDISNRARILLSKWSKLLARNQVIKKPNGVRPSSDGHKELISQSIGQFVGSESWHSNIDVPEDFLSLSTESLDNFRKLGSPQAAKLLPPSLDDSNKKSTFGVSSSQSRERRKVQLVEQPGQKSVSRSSQVTRAGSVSQGRPMSADDIQKAKMRALFMQNKYGKSGSKESKETKIDSLNKQPQTIPASIAACSSKVPTPKIDENKKPLLLASKTSNRLEAYSKPKVDVKEPLWEKCMRIQTPWKTPAEVELKDSWSVGGGGNSKEVDVQRNRERREKETIYKTIQEIPPNPKEPWDIEMDYDDTLTLEIPIEQLPDGDGADIAVSPNQVVAHTVEGVASTSSTSVAPAEPDLELLAVLLKNPELVFALTSGQAGSIPGEDVVKLLDMIKRGGANLGLSENTNGSYGTSVKAPDKVEVSLPSPTPLSDPRTNGWSSEASKNPFSRRSVASDRIIQNHAAVTTTNLLTQIPMTSTTALRQQPAVVVSSSRHLSNTTVSPYSLHQATNVNPEKQQPLGHVQIPSSNVGLTMKKNLITTNAPSVNYSGTHSAVAMRGNGTNYVKPVHSLSVQHEGVSNSFPQSSFKLPSPTPSNSVSQQQRHQQHIVQEAHYIEPPYRNPSRSYPPQTEKSDHGSESAWRIRQDIPFSSQRNPNYNTMVGGSRQSGFWDRNNQGGEDFESWSPENSPTRNPRYIPGRNYPDSRVNHGRNHRPEWSRQRGSSEHWDPDRQGNRKWHDQRR* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0684 1021 MobiDBLite consensus disorder prediction 924 974 - -
Vra3g0684 1021 Gene3D - 66 127 - -
Vra3g0684 1021 MobiDBLite consensus disorder prediction 372 431 - -
Vra3g0684 1021 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 234 317 IPR035441 -
Vra3g0684 1021 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 230 309 IPR035441 -
Vra3g0684 1021 MobiDBLite consensus disorder prediction 855 1021 - -
Vra3g0684 1021 SUPERFAMILY Homeodomain-like 69 130 IPR009057 -
Vra3g0684 1021 MobiDBLite consensus disorder prediction 684 727 - -
Vra3g0684 1021 SMART HOX_1 68 130 IPR001356 GO:0003677
Vra3g0684 1021 MobiDBLite consensus disorder prediction 855 888 - -
Vra3g0684 1021 MobiDBLite consensus disorder prediction 379 396 - -
Vra3g0684 1021 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 1021 - -
Vra3g0684 1021 MobiDBLite consensus disorder prediction 405 429 - -
Vra3g0684 1021 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Vra3g0684 1021 CDD homeodomain 69 125 IPR001356 GO:0003677
Vra3g0684 1021 MobiDBLite consensus disorder prediction 540 559 - -
Vra3g0684 1021 MobiDBLite consensus disorder prediction 985 1021 - -
Vra3g0684 1021 PANTHER HOMEOBOX PROTEIN LUMINIDEPENDENS 1 1021 - -
Vra3g0684 1021 MobiDBLite consensus disorder prediction 709 727 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0684 488 731 Homeobox Transcription Factor Family AT4G02560 47.541 8.51e-48 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0684 - - gmx:100806633 1635.16