Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0682 ATGGTGGAAAGAAGAAGAAAGCCTCTGATACTGTGTTCCACCAAACATGTCATCAATTCAACTGCTCCAACCGCCAATCTCTTCCACCATGGTTCTTCTCCCTCCTTCTTCCGTTTTCCTGTCGGAATTCTCCGATTCTCCGACCTCACAAATCTCTCTGTCGACCACTCTTCCCTGCTTGCTCTATCCACCCCTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCACCGGTTCTTGTCAAGAATGTTGGCACCAACACACAGAAAATTGCAGTGGCTGTTGCTTTGGATCCACCAGGCACCACGGCTAACACGGACTCTCAGTCTTCTAGTCCTTCTTCTTCTTCTCCTCCTCGAATAATGCTTCTTTTTCCTTCTTGTCATTTCCCTTTTAATGGTTCTGTGTCAGATGATCAAATAGCCTATGTATCGCCTCTTTTAGCCTTTAACCTTAACTTGCATGTGGCGTGCTTAAAATCCATTCTTCGCCACGGGCAAGAGGCTCTGGCTTCTTATTTCGGACCTCCAGATAAAAGGGGTAATGAGGATACTGCTAAAATAAATGTGGATTCTGTCATCAACGTAGAATTGGAACCACTTGCTATGCCTCCAAAGTTTGCCTCTCTTCTGAGGGTTTCTTTTGTGAAGATACCAGAATGTGGCATCCTTGAATCTATTAGAGCAAGTTCACCTTTTGAGGCAGAAGAGCGGCAAGACATGATCGACTTGTCACTGCAAAAGTACTTTGAAGTCGACAGGTACTTGTCCAAGGGAGATGTTTTTGGGATTAACATAAGTTGGAATTGCAATTCCCCCATTTGCGTTCCTTGTAACCAAAGATCATTGAATCAAAACGACAACCTTATCTGTTTCAAGGTTGTTGGTATGGAACCATCAGATGAACAGTTTTTTCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCACTCCCTCCAGATTTGTTAATTGGTGAACCTGAAGGACCGGTGCCTTTGCGAGGGGACACTGTGAAGATCTTGGCTTCGATACTCACACCAACTTTCTGTCCATCAGTGCTTTCTTCCAAGTTTAGGGTGTCTGTTCTATTGTATGGTTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTTGTCGACTTGGCTTGCATGTGGTGGAATATAACTGTCATGATCTTATGGTGTCTGATAGAACATCTGTTGCTCTGGCACAAGCTTTCAAGACAGCTCGAAGGTACTCGCCAGCAATACTTCTTCTTCGTCATTTTGATGTATTTCGAGAATCACAATCGCCTGAGGGTTCACCATATGATCAAAGAGGAAATACGTCTGAAGTTGCTTCAGTTATTAGGAAATTCACTGAGCCCGTCAGTGAACAACATGATAGTAATTCCGTGGGGAAATCAAACGTTGAATCTGTGGAGACGAGTGCTGAAAAGGCAAGTGGACATCAGGTCCTATTGATTGCTGCTGCTGACAGTTCAGAAGGTCTTCCATCAACTATCAGACGCTGTTTTAGCCACGAAATAAGCACGGGGCCTTTGACTGAAGAGCAAAGAGCTGAAATGCTATTACAGTCATTGCAAAGTTTTTCTGAACTCTTCTCTAATACTGATTCAGAAGCTTTAGTAAAAGAAATAGTTGGACAGACATCTGGTTACATGCCCAGGGACATTCGTGCTTTAATTGCTGATGCCGGTGCCAACTTATTTCCGAGAAATAATGCTAAAGTAGACAAAGACGTGTCTGATGATGTAGATAGTTTATTTAATTCCAAGATGGCAGAGGACACCAATCTCGGGAAAGTTTCACATCAGATTCCTGGGAAAGAAGACTTGTTGAATGCTTTGGAGCGATCAAAGAAAAGAAATGCGTCAGCATTGGGTACTCCAAAGGTTCCAAACGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGTTACCTCTCTTGCATAAAGATCTATTTTCATCTGGATTACGCAAGCGATCCGGTGTTCTTTTGTACGGTCCCCCTGGAACTGGCAAAACATTATTGGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGAGACATTTTCCAGAAGGCCAGATCTGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCACTTGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGACGGCTTAAGTGATTCAACACAGGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCCCTTCTGCGCCCTGGTCGATTTGATAAACTACTGTACGTTGGAGTTAACTCTGATGCATCTTACAGGGAACGAGTGCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATTGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGAGAAAAGTTTTGAGTGCAAATCCAGAGTCATCCAGCAAAGATAATGAAGCAGATTCTGTTGTTGTTCAGTATGATGACTTTGTCCAGGTCTTAGAAGAGCTGTCACCTTCCCTCTCAATAGCTGAGCTTAAGAAGTACGAACAACTGAGAGATCAGTTTGAAGGCAGCTCTAGATGA 2787 0.4342 MVERRRKPLILCSTKHVINSTAPTANLFHHGSSPSFFRFPVGILRFSDLTNLSVDHSSLLALSTPLLKTLSITSGSPVLVKNVGTNTQKIAVAVALDPPGTTANTDSQSSSPSSSSPPRIMLLFPSCHFPFNGSVSDDQIAYVSPLLAFNLNLHVACLKSILRHGQEALASYFGPPDKRGNEDTAKINVDSVINVELEPLAMPPKFASLLRVSFVKIPECGILESIRASSPFEAEERQDMIDLSLQKYFEVDRYLSKGDVFGINISWNCNSPICVPCNQRSLNQNDNLICFKVVGMEPSDEQFFRVNNTLTALVLVGSSPSALPPDLLIGEPEGPVPLRGDTVKILASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVACRLGLHVVEYNCHDLMVSDRTSVALAQAFKTARRYSPAILLLRHFDVFRESQSPEGSPYDQRGNTSEVASVIRKFTEPVSEQHDSNSVGKSNVESVETSAEKASGHQVLLIAAADSSEGLPSTIRRCFSHEISTGPLTEEQRAEMLLQSLQSFSELFSNTDSEALVKEIVGQTSGYMPRDIRALIADAGANLFPRNNAKVDKDVSDDVDSLFNSKMAEDTNLGKVSHQIPGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSSKDNEADSVVVQYDDFVQVLEELSPSLSIAELKKYEQLRDQFEGSSR* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0682 928 SMART AAA_5 678 818 IPR003593 -
Vra3g0682 928 SMART AAA_5 363 523 IPR003593 -
Vra3g0682 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 591 IPR027417 -
Vra3g0682 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 922 IPR027417 -
Vra3g0682 928 CDD AAA 676 814 - -
Vra3g0682 928 ProSitePatterns AAA-protein family signature. 785 803 IPR003960 GO:0005524|GO:0016887
Vra3g0682 928 PANTHER AAA-FAMILY ATPASE 53 924 - -
Vra3g0682 928 MobiDBLite consensus disorder prediction 100 117 - -
Vra3g0682 928 Gene3D - 816 902 - -
Vra3g0682 928 CDD AAA 357 427 - -
Vra3g0682 928 MobiDBLite consensus disorder prediction 98 117 - -
Vra3g0682 928 Pfam ATPase family associated with various cellular activities (AAA) 682 814 IPR003959 GO:0005524|GO:0016887
Vra3g0682 928 Pfam ATPase family associated with various cellular activities (AAA) 367 517 IPR003959 GO:0005524|GO:0016887
Vra3g0682 928 Gene3D - 640 917 IPR027417 -
Vra3g0682 928 Gene3D - 344 544 IPR027417 -
Vra3g0682 928 PANTHER PEROXISOME ASSEMBLY FACTOR 2 53 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0682 Vra-Chr3 7271719 7277855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0682 648 873 Calmodulin-binding Proteins AT3G56690 39.648 4.50e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0682 K13339 - gmx:100820183 1560.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0682 3 7271719 7277855 Vra3g0682 3 7271719 7277855 ECH
Vra8g0710 8 12997313 12998171 Vra3g0682 3 7271719 7277855 PCT