Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0670 ATGACCGCTGAAGCGCCGAAACCAGCGCGACCCTGTGACTACTGTGGTCACTCTATGGCGGTTCTCTACTGCAGAGCCGATTCAGCCAAGCTCTGTTTCTCGTGCGACCGCGAGGTTCACTCTACCAACCAGCTCTTCTCGAAGCACACGCGGACGCTGCTCTGCGACGCATGCGATCATTCCCCTGCTACCATACTATGTTCCACCGACACCTCTGTTCTCTGCCAGAACTGCGACTGGGAGAAGCACAACCCGTCGCTCTCCGATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTCACCGGTTGCCCTTCGGTCTCCGAACTTTTATCCGTTGTGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGTCGCTGATGGGTTCCTCGGGTGTGAGATTGAAGGGTTTTCGGATTTGTTTGTTTGGGATGCGCCTTCTGTCGTCACGCTTGATGATTTGATTTGTTCTTCCGCTTCTTCTCATAGCTTTCAGGCCATGGAAGTTCCTCCGCTGCCTAAGAATCGTAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAATCCGAGCCGTTGGATCTTGAACAATATGTGCAACCAGGAAACCTGTCCTCGGCTTTTGAAAGTGACGTGGAGTGGCATAGAGAAAGGAGTGAGCCTATGTATCAAGTTGTTCCTCCTGACCCATCATTGAGAACTTATACTGAAGAAGTTCCAGTTAAACAATCCACTTCTGTCGGGGAAACTCACACCTTTGGCGACAAGGGAGGGAATCCATCTATTTCTCTTAACTCTGAAACCCTACCAACTACTCCCAAAGCCGGTGCATGTGAGTTAACTAGCCAAGAAAGAGATTCTGCATTGTTACGGTATAAACAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGGTATGAATCACGAAAAGTTCGAGCAGAAAGCAGGGTGAGAGTCAAGGGTCGATTTGCTAAGATGGAGCGGGAACACTAA 1035 0.4995 MTAEAPKPARPCDYCGHSMAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDHSPATILCSTDTSVLCQNCDWEKHNPSLSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSVADGFLGCEIEGFSDLFVWDAPSVVTLDDLICSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPLDLEQYVQPGNLSSAFESDVEWHRERSEPMYQVVPPDPSLRTYTEEVPVKQSTSVGETHTFGDKGGNPSISLNSETLPTTPKAGACELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEREH* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0670 344 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
Vra3g0670 344 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 213 342 - -
Vra3g0670 344 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 7 206 - -
Vra3g0670 344 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 213 342 - -
Vra3g0670 344 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 206 - -
Vra3g0670 344 Pfam CCT motif 298 340 IPR010402 GO:0005515
Vra3g0670 344 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Vra3g0670 344 CDD Bbox1_BBX-like 11 54 - -
Vra3g0670 344 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Vra3g0670 344 MobiDBLite consensus disorder prediction 254 275 - -
Vra3g0670 344 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Vra3g0670 344 Pfam B-box zinc finger 54 97 IPR000315 GO:0008270
Vra3g0670 344 SMART bboxneu5 55 97 IPR000315 GO:0008270
Vra3g0670 344 SMART bboxneu5 7 54 IPR000315 GO:0008270
Vra3g0670 344 CDD Bbox1_BBX-like 54 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0670 Vra-Chr3 7206367 7210902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0670 4 313 C2C2-CO-like Transcription Factor Family AT2G47890 40.491 1.57e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vra3g0670 CCT 1.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0670 - - gmx:100817838 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0670 3 7206367 7210902 Vra3g0670 3 7206367 7210902 ECH
Vra3g0670 3 7206367 7210902 Vra8g1201 8 27296370 27300189 PCT