Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0663 ATGAGGAGGAGGAGAGAGATGGAAGCCGCCGCACCCAGAGATGGACTTCCCCATAACCGAGGTGGCACAGACGATTTGTACACAGAACTGTGGCGTGCATGTGCGGGGTCTTCCGTTTATGTTCCTCGTGTTGGAGAGAGGGTTTTCTACTTCCCACAAGGTCACTTGGAGCAGGTTGCTGCATTTACTCAGCATCAGCAAGATGGACACATGGAAATTCCTGTGTATGATTTGCCTCCTAAGATCTTATGCAGAGTTGTGTGTGTTCTATTAAAGGCCGAAACTTACACTGATGAGGTTTTTGCTCAAGTTACATTAGTTCCGGAGCCCAGGCAAAATCACTTTGGTTTAGAGAACGAAGACAATAATGTTCCTAGCAGAACTACAACCTACTCCTTTGGTAAGGTACTCACTCCGTCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAGACATGCTGATGAATGCTTCCGTCCCCTGGACATGACTCTTCAAACGCCTGCACAGGAAATTGTTGCGAAGGACTTGCACGGGTTCGAGTGGCATTTTCGACACATATACCGTGGTCAGCCGAAACGACACTTGCTAACTAGCGGTTGGAGCACGTTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTTGTTAGTGGGGAGGATGGACAAGTTCGTGTTGGGATACGTCGGGCAATTCGACATCACGGCAATGCATCCCCTTCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCATGCTGTCGCCACAGGATCAATGTTCACTGTCTATTACCACCCTTGGACGAACCCCTTTGAGTTTATCATTCCTCTGCAAAACTATTTGAAGTCAACTGTACCTGACTATTCAATTGGAACGAGAGTTCAGATGCAGTGTGATGTTGAAGAGTCTCTAAGAAGATATGCAGGTACGATAATTGGTAATGAAGTTATTGACAGCATTAGGTGGCCAGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCATAGTAGATGCCTTCATGCACCCTGAAAGGGTCTGTCCGTGGTGGATTGAGCCCTTGGAATCTGGCATGGAGAAGCACATTCCCGTTCTCCCCAACCCAAAAAAGGCACATGTACTTCACCAGCGCCCTTTGCCTGGATTGAATGTCTTTGCCATGGATGATGCTGCCGCTCAGAGTTCAGCCAGGCGGGTAGCGGATAGGGGCTTGCAAGGACAAGATTACAGTGGCCTGAGTACTTCACGGGCATTGCAAAGACCACCATCGACTGATGTAATCCACCCATCGAAGTTCTCAATCGGTGGCTCACAATTCGGGAAGGAGAATCTGAACCAGCTTCCCTTTCTGATGCAAGACATTCTTCATAAATCTCTTGGAAGATCAAGGTCATTGCCACATGAAGACTTGTCAATTTCAAGTTCAAATTTAAGCTCCATTTGTTCTGAATCCTTGGGATGGCCGCCTTCTGAATCTAGAAATGAAAATGATGCTCCACTTGGCCATCTTGGCAGTTGTAGCAAATACAAGCTTTTTGGAGTTAACTTAATTGACCGGCAACCGGAGCTCCCTTCACCACAATTTGCTGGTTTCAGCAAGACTTCAAGTCTGCTTTCTAGTCCTCCAATGTGTGTTACCTCCGGGAAAACATGTAAGAAGTGTCGCTCTGTCAATAATCGTAGCTGCACAAAGGTGCTTAAGTTGGGAACTGCTCTTGGAAGAGCAGTTGATCTTACCCGTTTTCGTGGATATGATGAACTCATTGCTGAGCTCGACTCGATGTTTGATTTTGGAGGCAGCTTAGTCAATGGAAGCAGTGGATGGCATGTGACCTGCATAGATGATGATGGAGACATGATGTTCTTGCGAGATTACCCATGGCAGGATTTCCAGTGTATGGTGCAAAAGATGATCATATGTCAGAAGGATGGTATCAACAATCTCAATCCAAGCTCTTCAACAGATCCTCCAAGCCTTTAG 2016 0.4648 MRRRREMEAAAPRDGLPHNRGGTDDLYTELWRACAGSSVYVPRVGERVFYFPQGHLEQVAAFTQHQQDGHMEIPVYDLPPKILCRVVCVLLKAETYTDEVFAQVTLVPEPRQNHFGLENEDNNVPSRTTTYSFGKVLTPSDTSTHGGFSIPKRHADECFRPLDMTLQTPAQEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFVSGEDGQVRVGIRRAIRHHGNASPSSSLISGHSMQLGILASASHAVATGSMFTVYYHPWTNPFEFIIPLQNYLKSTVPDYSIGTRVQMQCDVEESLRRYAGTIIGNEVIDSIRWPGSEWRCLKVQWDAIVDAFMHPERVCPWWIEPLESGMEKHIPVLPNPKKAHVLHQRPLPGLNVFAMDDAAAQSSARRVADRGLQGQDYSGLSTSRALQRPPSTDVIHPSKFSIGGSQFGKENLNQLPFLMQDILHKSLGRSRSLPHEDLSISSSNLSSICSESLGWPPSESRNENDAPLGHLGSCSKYKLFGVNLIDRQPELPSPQFAGFSKTSSLLSSPPMCVTSGKTCKKCRSVNNRSCTKVLKLGTALGRAVDLTRFRGYDELIAELDSMFDFGGSLVNGSSGWHVTCIDDDGDMMFLRDYPWQDFQCMVQKMIICQKDGINNLNPSSSTDPPSL* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0663 671 SUPERFAMILY CAD & PB1 domains 575 648 - -
Vra3g0663 671 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Vra3g0663 671 ProSiteProfiles PB1 domain profile. 572 655 IPR000270 GO:0005515
Vra3g0663 671 MobiDBLite consensus disorder prediction 419 433 - -
Vra3g0663 671 Gene3D - 298 371 - -
Vra3g0663 671 Gene3D - 568 661 - -
Vra3g0663 671 CDD B3_DNA 132 233 IPR003340 GO:0003677
Vra3g0663 671 Coils Coil 671 671 - -
Vra3g0663 671 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Vra3g0663 671 Pfam Auxin response factor 261 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra3g0663 671 PANTHER AUXIN RESPONSE FACTOR 15 665 - -
Vra3g0663 671 SMART B3_2 133 235 IPR003340 GO:0003677
Vra3g0663 671 Gene3D - 131 235 IPR015300 -
Vra3g0663 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 665 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra3g0663 671 MobiDBLite consensus disorder prediction 408 441 - -
Vra3g0663 671 MobiDBLite consensus disorder prediction 1 22 - -
Vra3g0663 671 SUPERFAMILY DNA-binding pseudobarrel domain 125 263 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0663 Vra-Chr3 7125204 7133666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0663 19 662 B3 DNA Binding Superfamily AT4G23980 39.227 4.86e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra3g0663 B3 7e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0663 - - gmx:100802387 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0663 3 7125204 7133666 Vra3g0663 3 7125204 7133666 ECH