Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0659 ATGGCGGAAGGGAAGGAAGAGAGTAAATCTAGCGAAGAGAGCGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACAGAACCCGAACTCCTTGCAATGTTCCAGGAGTTCGCTCTCGTCGACGAGGTCAACATAATCAAGGACAAAGCAACTCGTGTTTCCCGAGGTTGTTGTTTCGTCATATGTCCTTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAACAAGAAGACGCTACCCGGGGCATCCAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCGAAGAATGTATCCGAAGTCGAAATATCTGCACTTTTCTCCCAGTATGGAACCATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGACCAGGCGCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACACAGTGATTCTCAGCACCCGTCATTGTTTGGAGCCTTGCCTATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGCTCATGCCCTACCGCATGCCACCAATGCAGAGTCAACACGGTTTCCATAATATGATGCCCCATATGAATCATCAAGGAAATGCATTAAGGCCTGATCTTGGCCCTAATATGAACCCTAGAAATTATCATGTGGCTCCTGCAAGTTATGTTGGTTCTTATCCTGCTGTAACAGGTCTACAACATCCCATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATGCTTCTCCAGGCTCCGTTTCACCTGCTAGTGGAAACAACAACACTGCTGCATCTTCTGGTGGCAGCAAAAATTCTGGGGGGCAGGTTGAAGGACCACCTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATGAAGAACTTGCCAATGCTTTTCAGCCATTCGGTATGGTCTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCTCCAGAGGATGCTCAATCTGCCATCAGTATGATGAATGGATTCCAATTAGGAGGTAAGAAGTTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1299 0.4496 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFQEFALVDEVNIIKDKATRVSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSQYGTIKDLQVLRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHSDSQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGFHNMMPHMNHQGNALRPDLGPNMNPRNYHVAPASYVGSYPAVTGLQHPMAYPTGMISPRPMNASPGSVSPASGNNNTAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDEELANAFQPFGMVLSAKVFVDKATGVSKCFGFVSYDSPEDAQSAISMMNGFQLGGKKLKVQLKRDNKQGKPY* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0659 432 Gene3D - 2 100 IPR012677 -
Vra3g0659 432 MobiDBLite consensus disorder prediction 306 342 - -
Vra3g0659 432 Gene3D - 101 192 IPR012677 -
Vra3g0659 432 Gene3D - 313 424 IPR012677 -
Vra3g0659 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Vra3g0659 432 PANTHER RNA BINDING PROTEIN 7 419 - -
Vra3g0659 432 MobiDBLite consensus disorder prediction 185 208 - -
Vra3g0659 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Vra3g0659 432 MobiDBLite consensus disorder prediction 310 338 - -
Vra3g0659 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Vra3g0659 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Vra3g0659 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Vra3g0659 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Vra3g0659 432 SMART rrm1_1 104 179 IPR000504 GO:0003723
Vra3g0659 432 SMART rrm1_1 348 421 IPR000504 GO:0003723
Vra3g0659 432 SMART rrm1_1 16 92 IPR000504 GO:0003723
Vra3g0659 432 CDD RRM1_2_CELF1-6_like 16 92 - -
Vra3g0659 432 MobiDBLite consensus disorder prediction 193 208 - -
Vra3g0659 432 CDD RRM3_CELF1-6 349 421 - -
Vra3g0659 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 425 IPR000504 GO:0003723
Vra3g0659 432 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 419 - -
Vra3g0659 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 419 IPR000504 GO:0003723
Vra3g0659 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Vra3g0659 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Vra3g0659 432 CDD RRM1_2_CELF1-6_like 104 179 - -
Vra3g0659 432 SUPERFAMILY RNA-binding domain, RBD 103 427 IPR035979 GO:0003676
Vra3g0659 432 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0659 Vra-Chr3 7102969 7107777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0659 344 428 Eukaryotic Initiation Factors Gene Family AT1G71770 38.636 5.47e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0659 K13207 - gmx:100813239 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0659 3 7102969 7107777 Vra8g1192 8 27143982 27148575 PCT