Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0656 ATGAAGATGAGAGCTTTTCTTGTAGCTTGTTTGGCACTGTTTTGTATCATAGGGGTTTGTCAAGGTGGCAACCTTAGAAAAAAATTCTACAAGCTAACATGTTCTCAAGCCGAAGACATTGTTAGGACCAAAATCCAGGAACATGTCTCTGCAAGGCCTGAATTGCCTGCCAAGTTGATCAGACTGCACTTTCATGACTGTTTTGTCAGGGGTTGTGATGGTTCGGTTTTGCTGGACTCCACTGCCAGCAACACAGCAGAAAAGGATTCGATTCCGAACTTATCTCTGTCAGGCTTCGATGTCATTGATGACATAAAAGCAGCATTGGAGGAAAAATGTCCTGGAACTGTATCATGTGCTGACATACTTGCATTGGCTGCAAGGGATGCTGTTTCTGTCCAGTTCAATAAGCCTATGTGGGAAGTGCTTACCGGTAGAAGGGATGGTAGAGTATCCATAAGTGGTGAAGCCTTAGCCAATCTGCCAGCACCTTTTTTCAACATCACCCAGCTCAGACAAAGCTTTGAGAGTAAAAAGCTTACAGTGCATGATCTGGTTGTGTTATCAGGAGCACACACAATTGGGGTAGGTCATTGCAACTTATTCAGCAACAGGCTTTTCAACTTCACCGGAAAGGGTGATCAAGATCCTTCTCTGAATCCTACGTACGCCACTCTTTTGAAGACAAAATGTCAAAGTCTGAGTGACACCACCACTACAGTAGAGATGGATCCTGACAGTTCAAGCACCTTTGACAATGATTATTATTCTATCCTTCTTCAAAACAAGGGTCTATTCCAATCAGATGCTGCCCTTTTAACAGCCAAGGTCTCAAAAAACATTGTGAATGAATTGACCAAACAAGACAAGTTCTTCACAGAGTTTCGGCAGTCAATGAAGAGAATGGGCGCCATTGAGGTTCTCACTGGCTTGGATGGTGAAATTAGAACAAAGTGCTCTGTTGTCAACTCTTAA 975 0.4318 MKMRAFLVACLALFCIIGVCQGGNLRKKFYKLTCSQAEDIVRTKIQEHVSARPELPAKLIRLHFHDCFVRGCDGSVLLDSTASNTAEKDSIPNLSLSGFDVIDDIKAALEEKCPGTVSCADILALAARDAVSVQFNKPMWEVLTGRRDGRVSISGEALANLPAPFFNITQLRQSFESKKLTVHDLVVLSGAHTIGVGHCNLFSNRLFNFTGKGDQDPSLNPTYATLLKTKCQSLSDTTTTVEMDPDSSSTFDNDYYSILLQNKGLFQSDAALLTAKVSKNIVNELTKQDKFFTEFRQSMKRMGAIEVLTGLDGEIRTKCSVVNS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0656 324 ProSiteProfiles Plant heme peroxidase family profile. 24 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 Pfam Peroxidase 41 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 SUPERFAMILY Heme-dependent peroxidases 25 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Vra3g0656 324 CDD secretory_peroxidase 24 322 IPR033905 GO:0004601|GO:0042744
Vra3g0656 324 Gene3D Peroxidase, domain 2 162 302 - -
Vra3g0656 324 PANTHER PEROXIDASE 25-RELATED 6 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0656 324 PANTHER PEROXIDASE 6 322 - -
Vra3g0656 324 Gene3D - 28 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0656 Vra-Chr3 7077780 7079185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0656 13 324 Peroxidase AT1G05260 54.603 2.79e-116 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0656 K00430 - gsj:114405310 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0656 3 7077780 7079185 Vra3g0656 3 7077780 7079185 ECH
Vra3g0656 3 7077780 7079185 Vra8g1189 8 27095529 27097371 PCT
Vra8g0258 8 3289289 3294231 Vra3g0656 3 7077780 7079185 PCT