Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0653 ATGCCGGCTGGTCACGGTTTGAGATCTCGCACGAGAGATTCGTTCTCTCGTCCCTTCAGGAAGAAGGGAACCATCGCCCTCACAACTTATCTTCGAACTTACCACATCGGCGATTACGTTGACATCAAGGTTAACGGCGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCATGGCCGCACCGGTCGTGTTTGGAACGTCACCAAACGCGCCATTGGTGTCGAGGTTAACAAACAGGTGGGGAACAGAATTATTAGAAAGAGGATTCATGTGCGTGTTGAGCATGTGATGCCTTCAAGGTGCACTGAGGAGTTCCGTTTGAGGAAGATCAAGAATGATCAACTAAAGGCGGATGCTAAGGCAAAGGGGGAGAAAATTAGCACGAAGAGACAACCCGAGGGCCCCAAACCAGGTTTCATGGTGGAAGGAGCTACACTAGAAACTGTCACTCCCATTCCTTATGACGTGGTTAATGATCTTAAAGGAGGATATTAG 495 0.4929 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0653 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vra3g0653 164 Gene3D - 99 156 - -
Vra3g0653 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vra3g0653 164 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 164 - -
Vra3g0653 164 MobiDBLite consensus disorder prediction 118 138 - -
Vra3g0653 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Vra3g0653 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Vra3g0653 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0653 Vra-Chr3 7057200 7058269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0653 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G57860 84.146 4.34e-105 296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0653 3 7057200 7058269 Vra3g0653 3 7057200 7058269 ECH