Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0644 ATGGCTTCGAGATTCTGGACTCAGGGTGGGAGTGATTCCGAGGAGGAGGAGAGTGATTACGATGAGGAGGTTGAAACCGCGGCAGGTGAATCTGCTAGTCAAGCAGTGACAAGCAGGTACCTGCAGGAAAATGCTAGTGACAGTGATGATTCTGATGGGCAGAAGCGTGTTGTGCGGTCGGCGAAAGATAAGCGTTTCGAGGAGATGGCGTCCACTGTTGATCAGATGAAGAATGCCATGAAGATTAATGATTGGGTGAGCCTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAGGTTATGCGTGTCACTGAGTCTGTGAAAGTTCCGAATCTCTACATCAAGACGCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCCTTGGCTAATAAGGATGCCAAGAAGAAGATGAGCAGTAGCAATGCTAAGGCTTTGAACACCATGAAGCAGAAACTGAAGAAAAATAATAAGCAATACGAGGATTTGATTAATAAGTGTAGGGAGAATCCCGAGAGTGACGAGGAGAAGGAAGAAGAAGAGAGCGAGGAAGAGTATGAGAGTGATGATGAGATTATTGAGCCAGAGCAGCTTCGGAAGCCAGAAGCAAAATCAGATTCTGAAGCCTCTCAGTATGATGATGAAAAGCAGGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGATCGGCTATTGGATAGACAATTTATGAAAGACCCCAGTGAGATCACATGGGACACGGTTAACAAGAAATTCAAAGAGGTTGTGGCTGCTAGGGGCAGAAAGGGGACTGGGAGATTTGAGCAGGTTGAGCAGCTTACTTTCTTAACGAAAGTTGCTAAGACACCTGCACAGAAGTTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAATTTGATGTCAATCCTGGGCTCAATGGACATATGCCCATAAATGTGTGGAAAAAATGTGTGCAAAACATGCTGGTCATTCTTGATATTCTAGTGCAGCATCCAAACATATTGGTTGACGATTCGGTGGAACCGGATGAGAACGAAACTCAGAAAGGGGCTGACTATAATGGACCAATTCGGGTATGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGACGTTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGGGACTATGTTGAGAGACTCAGGGATGAACCCTTGTTTCTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGAGTTGGGAATTTCAAAGCTGCCTCTAAGGTGGCCTTGAGGAGAGTTGAGCTCATTTACTACAAACCGCAAGAAGTTTATGATGCAATGAAAAAATTGACTGAGCTGACAGAGAATGGAGATGATGCAGGGGAGACAAGTGAGGAGCCAAAAGGATTTGAGGAATCAAGAATTCCTACTGCATTTATTGTTACCCCAGAGATTGTGGCCCGGAAGCCCACATTCCCTGACAATAGCAGGACCATAATGGATTTATTGGTATCATTGATATACAAGTACGGAGACGAGCGAACTAAAGCCCGTGCAATGCTCTGTGATATATACCACCATGCTCTCCTTGATGAGTTCTCAATTGCCCGTGATCTGCTTCTTATGAGTCATTTGCAAGATAGTATTCAACACATGGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGATTGGACTGATTTCTGAAGCTCATGGTTGTCTCTCTGAACTGTACTCTGGTGGAAGGGTAAAAGAGTTACTTGCCCAAGGTGTATCACAAAGTCGCTATCATGAGAAGACTCCCGAACAGGAAAGGTTGGAAAGAAGGAGGCAAATGCCATATCATATGCACATCAATCTTGAACTCCTGGAGTCAGTACATCTGGTATCTGCCATGCTGCTGGAAGTTCCTAATATGGCAGCCAATGTTCATGATGCTAAACGCAAGGTAATTTCTAAGACTTTCCGTCGCTTGCTTGAGGCCAGCGAGAAGCAAACATTCACTGGTCCACCGGAAAATGTGAGAGATCATGTTATGGCTGCCACAAGGTTTCTCGTAAAGGGAGACTTCCAAAAGGCTTTTGACATTATTGTGTCTCTCGATGTATGGAAATTTGTGAGAAATCGAGACACTGTGCTTGAAATGCTGAAAGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCGCTTCTTCTTATGAATCCCTGAGCCTGGATCAACTTTCAAAATTTTTTGATCTCTCTGTTTCTTGCACTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTCCATGCAAGCTGGGACCAGCCAACTGGGTGTGTTGTTTTCCAAGATGTTGAATACTCCAGGCTGCAGGCATTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGCAATGAAAGAGCAACGGAAGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCCGCGGCCGCTGCTGGTGGTAGTGGAACAGCCTCTTCAGGTGGTAGATGGCAAGACCTGGCCCTTTCACAGCCAAGGCAAGGCAGTGGGCGTGCTGGATATGGTAGTGGTGGTGGGAGGTCAATAGGTCAAGTAGCCGCAGGTGGCTATTCCAGGGATCGAATGGGACGGGGCACAGGTGGTGGCTACCAGAGTGGACGGTATCATGATGGAGGTTATGGGAGGAGTGCTCAAGGGGGTTCTGCATTGAGGGGACCCCAGGGCGATACGTCTTCACGCATGGTTAGCCTTAAGGGTGTTCGAGCTTAA 2823 0.4587 MASRFWTQGGSDSEEEESDYDEEVETAAGESASQAVTSRYLQENASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESVKVPNLYIKTLVMLEDFLAQALANKDAKKKMSSSNAKALNTMKQKLKKNNKQYEDLINKCRENPESDEEKEEEESEEEYESDDEIIEPEQLRKPEAKSDSEASQYDDEKQDAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQHPNILVDDSVEPDENETQKGADYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMKKLTELTENGDDAGETSEEPKGFEESRIPTAFIVTPEIVARKPTFPDNSRTIMDLLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSIQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEASEKQTFTGPPENVRDHVMAATRFLVKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFASSYESLSLDQLSKFFDLSVSCTHSIVSRMMINEELHASWDQPTGCVVFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGGSGTASSGGRWQDLALSQPRQGSGRAGYGSGGGRSIGQVAAGGYSRDRMGRGTGGGYQSGRYHDGGYGRSAQGGSALRGPQGDTSSRMVSLKGVRA* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0644 940 MobiDBLite consensus disorder prediction 883 940 - -
Vra3g0644 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 - -
Vra3g0644 940 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Vra3g0644 940 Pfam PCI domain 660 788 IPR000717 -
Vra3g0644 940 MobiDBLite consensus disorder prediction 175 193 - -
Vra3g0644 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 938 - -
Vra3g0644 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra3g0644 940 SMART PINT_4 721 809 IPR000717 -
Vra3g0644 940 MobiDBLite consensus disorder prediction 12 26 - -
Vra3g0644 940 MobiDBLite consensus disorder prediction 133 229 - -
Vra3g0644 940 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Vra3g0644 940 MobiDBLite consensus disorder prediction 155 174 - -
Vra3g0644 940 MobiDBLite consensus disorder prediction 135 154 - -
Vra3g0644 940 MobiDBLite consensus disorder prediction 45 63 - -
Vra3g0644 940 MobiDBLite consensus disorder prediction 194 229 - -
Vra3g0644 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 938 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra3g0644 940 MobiDBLite consensus disorder prediction 1 63 - -
Vra3g0644 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 871 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra3g0644 940 Coils Coil 144 171 - -
Vra3g0644 940 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0644 Vra-Chr3 6982217 6986294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0644 1 940 Eukaryotic Initiation Factors Gene Family AT3G56150 68.750 0.0 1204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0644 K03252 - gmx:100781967 1570.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0644 3 6982217 6986294 Vra3g0644 3 6982217 6986294 ECH