Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0637 ATGGAGTCTCAGGTGAAGCATGCTCTTGTTGTTAAAGTTATGGGTCGTACTGGATCCAGAGGGCAGGTGACCCAGGTTAGAGTGAAGTTTTTGGATGATCAGAATCGTCACATCATGAGGAATGTGAAAGGACCTGTGAGAGAAGGAGACATTCTCACCCTACTCGAATCTGAGAGGGAAGCAAGAAGATTGCGCTAG 198 0.4697 MESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0637 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vra3g0637 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vra3g0637 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Vra3g0637 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vra3g0637 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Vra3g0637 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Vra3g0637 65 Gene3D - 1 65 IPR012340 -
Vra3g0637 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0637 Vra-Chr3 6942374 6943737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0637 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 1.13e-35 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0637 K02979 - gmx:100790570 103.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0637 3 6942374 6943737 Vra3g0637 3 6942374 6943737 ECH