Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0628 ATGGAAAATGCAATTTCATCCAGCTTGGCGAGAACGAAATCGGAGGATGTTGAGGAGACAGTGACAACGACAAGTGTGAAATCGCCCCCGTCGGCGGAGGGTGGTGGAGTGCTGTCGAGGAAATCGAGCAAGACGGCGGCCTCGCCGAGTGGGGGCGGAGGAAGAAGCACACACATAAGGAGGGCGAGGAGCGCTCAGTTGAAGGTGGATGTGGATGAGGTTGGCAGCGGCGTGGCTCTGAGCCGAGCTTCTAGCGCCAGCTTGGGCCTCTCGTTCTCCTTCACTGGCTTCACTCTCCCTCCTGATGAAATCGCCGATTCAAAACCTTTCAGCGACGAAGATATCCCGGAGGATATTGAAGCCGGAACTCATAAGCCTAAGTTTCAGACAGAACATACTCTGCCAATATATCTGAAGTTCACCGACGTGACCTATAAGGTAGTGATTAAAGGCATAACTACAACCAAGGAAAAAGATATCTTGAAGGGGATCACTGGTTCTGTTAATCCTGGGGAAGTTTTGGCATTGATGGGTCCTTCAGGAAGTGGAAAGACATCTTTGTTAAATCTGCTAGGAGGAAGGTTAATTCAGTCCACAATTGGTGGCTCTATCACTTACAATGACCAACCTTATTCCAAGTTTCTAAAGAGCAGGATTGGGTTCGTGACACAAGACGATGTTCTGTTTCCTCACCTCACTGTTAGAGAAACATTGACGTACGCTGCTCGCTTAAGATTGCCAAATATACTAACGAAAGAGCAAAAGGAAAAACGAGCTTTAGATGTCATCGAAGAGCTGGGATTAGAGAGGTGCCAAGATACTATGATAGGAGGTTCGTATGTTCGAGGAGTATCTGGTGGAGAGAGGAAGAGGGTTTGTATTGGCAGTGAGATCATAATCAACCCTTCTCTTCTATTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCTTTAAGGATTGTTCAATTGCTACAAGACATAGCAGAGGCAGGAAAAACCGTAGTGATAACAATCCATCAACCATCTAGCAGACTCTTCCATAAATTTGATAAGTTGATTCTTCTAGGAAAAGGGAGTTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGGACTATTTTCAGTTTATAGGGTGTGCACCCCTTATTACCATGAACCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACGTGAATGATATTTCTGTACCATCAGAGTTAAAGGATAGAGTGCAGGTAGGAAATGCGGAAGTTGAAACATGCAATGACAAACCATCTGCTTCAGTTGTACAAGAGTATCTGGAAGAGGCATATGATTCTCGAGTGGCAGAAATAGAGAAGACAAAGTTAATGGTTCCTGTCCCCCTTGATGAAGAACTGAAGTCTAAAATCTATTCTTGTAAAAGACAGTGGGGGGCAAGTTGGTTTGAGCAATTTTCTATACTGTTTTCAAGAGGGTTCAAAGAGAGGAAGCATGACTATTTTAGCTGGTTGAGAATTACCCAAGTTCTTTCTACAGCAGTCATCTTAGGATTACTTTGGTGGCAATCAGATGCTAACAACCCAAAAGGTTTGCAAGATCAGGCAGGACTTCTCTTCTTTATTGCCGTGTTTTGGGGATTTTTTCCTGTCTTTACTGCAATATTCACATTTCCTCAAGAGAGGGCCATGCTGACTAAGGAACGAACAACGGATATGTACAGACTAAGTGCATATTTTGTGGCTAGAACTACAAGTGACCTTCTACTAGACCTGGTGTTACCAGTCTTTTTCCTCCTTGTTGTGTATTTCATGGCCAGTTTGAGACTGAGTGCAGGGCGTTTTTTTCTTAGTATTCTTACGGTTTTTCTCTGCATCATAGCAGCTCAGGGACTTGGACTTGCAATCGGGGCTACACTAATGGATTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACTTTCATGCTGGCTGGAGGATTTTTTGTGCAGAAAGTCCCCATATTCATATCTTGGATTCGCTACCTCTCCTTCAACTATCATACGTATAAACTTCTGCTTAAGGTTCAATATGAACACATCACACGGACCATAAATGGAATCACACTTGACAGTGGATTCACAGAGGTTGCTGCTCTGCTAGCCATGGTTTTTGGTTACCGTCTTTTGGCATATCTCTCCTTGCGGCGGATGAAACTTCAAGCTGGAAATTAA 2205 0.4372 MENAISSSLARTKSEDVEETVTTTSVKSPPSAEGGGVLSRKSSKTAASPSGGGGRSTHIRRARSAQLKVDVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADSKPFSDEDIPEDIEAGTHKPKFQTEHTLPIYLKFTDVTYKVVIKGITTTKEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGGRLIQSTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVRETLTYAARLRLPNILTKEQKEKRALDVIEELGLERCQDTMIGGSYVRGVSGGERKRVCIGSEIIINPSLLFLDEPTSGLDSTTALRIVQLLQDIAEAGKTVVITIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFQFIGCAPLITMNPAEFLLDLANGNVNDISVPSELKDRVQVGNAEVETCNDKPSASVVQEYLEEAYDSRVAEIEKTKLMVPVPLDEELKSKIYSCKRQWGASWFEQFSILFSRGFKERKHDYFSWLRITQVLSTAVILGLLWWQSDANNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFVARTTSDLLLDLVLPVFFLLVVYFMASLRLSAGRFFLSILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRYLSFNYHTYKLLLKVQYEHITRTINGITLDSGFTEVAALLAMVFGYRLLAYLSLRRMKLQAGN* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0628 734 Gene3D - 137 378 IPR027417 -
Vra3g0628 734 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 28 728 - -
Vra3g0628 734 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 728 - -
Vra3g0628 734 Pfam ABC-2 type transporter 479 688 IPR013525 GO:0016020|GO:0140359
Vra3g0628 734 ProSitePatterns ABC transporters family signature. 284 298 IPR017871 GO:0005524
Vra3g0628 734 CDD ABCG_EPDR 135 366 - -
Vra3g0628 734 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 138 384 IPR003439 GO:0005524
Vra3g0628 734 MobiDBLite consensus disorder prediction 1 64 - -
Vra3g0628 734 Pfam ABC transporter 161 312 IPR003439 GO:0005524
Vra3g0628 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 378 IPR027417 -
Vra3g0628 734 SMART AAA_5 170 361 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0628 Vra-Chr3 6853792 6862495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0628 124 413 Calmodulin-binding Proteins AT2G36910 26.667 9.34e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0628 K05681 - gmx:100796008 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0628 3 6853792 6862495 Vra3g0628 3 6853792 6862495 ECH
Vra3g0628 3 6853792 6862495 Vra8g0170 8 1987352 1996872 PCT